Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   V4942_RS08850 Genome accession   NZ_CP144687
Coordinates   1638376..1639407 (-) Length   343 a.a.
NCBI ID   WP_011174084.1    Uniprot ID   Q72GX7
Organism   Thermus thermophilus strain TTHB27_delta_cmr4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633376..1644407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4942_RS08825 (V4942_08825) pilD 1634343..1635407 (+) 1065 WP_011174079.1 A24 family peptidase Machinery gene
  V4942_RS08830 (V4942_08830) - 1635444..1635947 (+) 504 WP_011174080.1 DUF2939 domain-containing protein -
  V4942_RS08835 (V4942_08835) - 1635961..1636881 (+) 921 WP_011174081.1 nitroreductase family protein -
  V4942_RS08840 (V4942_08840) - 1636835..1637632 (-) 798 WP_011174082.1 C40 family peptidase -
  V4942_RS08845 (V4942_08845) - 1637633..1638391 (-) 759 WP_041443621.1 DUF721 domain-containing protein -
  V4942_RS08850 (V4942_08850) recF 1638376..1639407 (-) 1032 WP_011174084.1 DNA replication and repair protein RecF Machinery gene
  V4942_RS08855 (V4942_08855) - 1639409..1640581 (-) 1173 WP_011174085.1 MFS transporter -
  V4942_RS08860 (V4942_08860) pstB 1640591..1641406 (-) 816 WP_011174086.1 phosphate ABC transporter ATP-binding protein PstB -
  V4942_RS08865 (V4942_08865) pstA 1641400..1642605 (-) 1206 WP_011174087.1 phosphate ABC transporter permease PstA -
  V4942_RS08870 (V4942_08870) pstC 1642598..1643500 (-) 903 WP_011174088.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37758.62 Da        Isoelectric Point: 8.9580

>NTDB_id=847415 V4942_RS08850 WP_011174084.1 1638376..1639407(-) (recF) [Thermus thermophilus strain TTHB27_delta_cmr4]
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRALWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=847415 V4942_RS08850 WP_011174084.1 1638376..1639407(-) (recF) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGCGGCTTCTCCTCTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTCTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
ACGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGAGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72GX7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.543

98.251

0.408