Detailed information NTG0847414

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: V4942_RS08825
• Genome accession: NZ_CP144687
• Coordinates: 1634343..1635407 (+)
• Length: 354 a.a.
• NCBI ID: WP_011174079.1
• Uniprot ID: Q72GY2
• Organism: Thermus thermophilus strain TTHB27_delta_cmr4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1629343..1640407

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V4942_RS08805 (V4942_08805)	-	1629851..1630633 (+)	783	WP_011174075.1	RNA methyltransferase	-
V4942_RS08810 (V4942_08810)	groES	1630731..1631036 (+)	306	WP_011174076.1	co-chaperone GroES	-
V4942_RS08815 (V4942_08815)	groL	1631049..1632680 (+)	1632	WP_011174077.1	chaperonin GroEL	-
V4942_RS08820 (V4942_08820)	-	1632744..1634276 (-)	1533	WP_011174078.1	thermostable carboxypeptidase 1	-
V4942_RS08825 (V4942_08825)	pilD	1634343..1635407 (+)	1065	WP_011174079.1	A24 family peptidase	Machinery gene
V4942_RS08830 (V4942_08830)	-	1635444..1635947 (+)	504	WP_011174080.1	DUF2939 domain-containing protein	-
V4942_RS08835 (V4942_08835)	-	1635961..1636881 (+)	921	WP_011174081.1	nitroreductase family protein	-
V4942_RS08840 (V4942_08840)	-	1636835..1637632 (-)	798	WP_011174082.1	C40 family peptidase	-
V4942_RS08845 (V4942_08845)	-	1637633..1638391 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
V4942_RS08850 (V4942_08850)	recF	1638376..1639407 (-)	1032	WP_011174084.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37885.22 Da
• Isoelectric Point: 8.1123

>NTDB_id=847414 V4942_RS08825 WP_011174079.1 1634343..1635407(+) (pilD) [Thermus thermophilus strain TTHB27_delta_cmr4]
MWPLFALLLGLAVGSFLNVVVHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNLFLRRFREARAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRPVVLPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLLLR
QRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1065 bp

>NTDB_id=847414 V4942_RS08825 WP_011174079.1 1634343..1635407(+) (pilD) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGTGGCCCCTCTTCGCCCTGCTCCTCGGCCTCGCGGTGGGTTCCTTTCTCAACGTGGTGGTCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACCTCTTTCTGCGGCGCTTTAGGGAGGCCAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGCCCGTGGTCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTGGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCCGCCGGGGGCCTGGCCCTCGCCGGGGGGCTCTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGAAGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTCTTGGGGGCCCTCG
GGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTTTGGGCCTTCTCCTTAGG
CAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTGGGGGGC
GTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (8-88)

• Type IV leader peptidase family (Peptidase_A24) (102-209)

• Type IV leader peptidase family (Peptidase_A24) (219-317)

3D structure

• AlphaFold DB: Q72GY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.648	100	0.483