Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   V4942_RS00885 Genome accession   NZ_CP144687
Coordinates   154179..155450 (-) Length   423 a.a.
NCBI ID   WP_011172628.1    Uniprot ID   Q72L87
Organism   Thermus thermophilus strain TTHB27_delta_cmr4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 149179..160450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4942_RS00865 (V4942_00865) sucD 150061..150927 (-) 867 WP_011172624.1 succinate--CoA ligase subunit alpha -
  V4942_RS00870 (V4942_00870) sucC 150924..152099 (-) 1176 WP_011172625.1 ADP-forming succinate--CoA ligase subunit beta -
  V4942_RS00875 (V4942_00875) - 152144..153178 (+) 1035 WP_011228011.1 bis-aminopropyl spermidine synthase family protein -
  V4942_RS00880 (V4942_00880) - 153172..154182 (-) 1011 WP_011172627.1 PIN domain-containing protein -
  V4942_RS00885 (V4942_00885) radA 154179..155450 (-) 1272 WP_011172628.1 DNA repair protein RadA Machinery gene
  V4942_RS00890 (V4942_00890) clpC 155461..157671 (-) 2211 WP_011172629.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  V4942_RS00895 (V4942_00895) - 157800..159320 (+) 1521 WP_011172630.1 glycine--tRNA ligase -
  V4942_RS00900 (V4942_00900) - 159501..159737 (+) 237 WP_011172631.1 hypothetical protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 44946.01 Da        Isoelectric Point: 6.7328

>NTDB_id=847370 V4942_RS00885 WP_011172628.1 154179..155450(-) (radA) [Thermus thermophilus strain TTHB27_delta_cmr4]
MAKATYACVECGYRTPKPLGRCPSCGSWESFQEVAPAPASRRAKPSPLPLLALSQVDEAEERRFSSGLSEVDRVLGGGFV
TGEVVLLGGEPGVGKSTLLLEMAKRMPQRVYYVAGEESPAQIKLRAQRLGVKDLLLVRETRLEPLLALLEEDPPEVLFVD
SVQTLEAGGSPGSLVAVREATSALVRFAKESGAAVVLVGHVTKEGVVAGPKSVEHAVDATLYLETAGPYRVLRSAKNRFG
PVGEIGVFRMEEAGLLEVENPSEAFLKERPLGVPGSAVALALAGERALALEVQALAAKTPFPAPRRVVQGLDSRRVDVVL
AVLERRLGLPLANLDIYVNLAGGLKVQDPGLDLAVALAVYSAVVGRPLPADLALVGEVGLAGEVRRVAGLERRLREGERA
GFGRFLHPGNLKRLQEAVEAYLA

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=847370 V4942_RS00885 WP_011172628.1 154179..155450(-) (radA) [Thermus thermophilus strain TTHB27_delta_cmr4]
ATGGCCAAGGCCACCTACGCCTGCGTGGAGTGCGGCTACCGCACCCCCAAGCCCTTGGGGCGGTGCCCCTCCTGCGGTTC
CTGGGAGAGCTTCCAGGAGGTGGCCCCCGCCCCGGCCTCGAGGCGGGCCAAGCCCTCCCCCCTCCCCCTCCTCGCCCTCT
CCCAGGTGGACGAGGCCGAGGAGCGCCGCTTCTCCTCGGGGCTTTCCGAGGTGGACCGGGTCCTGGGCGGGGGGTTCGTG
ACGGGGGAGGTGGTCCTGTTGGGAGGGGAGCCCGGGGTGGGCAAGAGCACCCTCCTCCTGGAGATGGCCAAGCGGATGCC
CCAAAGGGTCTACTACGTGGCCGGGGAGGAGTCCCCCGCCCAGATCAAGCTCCGGGCGCAGCGCCTCGGGGTGAAGGACC
TCCTCCTCGTGCGGGAGACCCGCCTCGAGCCCCTCCTCGCCCTCCTGGAGGAGGACCCCCCGGAGGTCCTCTTCGTGGAC
TCCGTGCAGACCCTCGAGGCCGGAGGGAGCCCGGGGAGCCTGGTGGCCGTCCGGGAGGCGACCTCGGCCCTGGTGCGCTT
CGCCAAGGAGAGCGGGGCCGCCGTGGTCCTCGTGGGCCACGTGACCAAGGAGGGGGTGGTGGCCGGCCCGAAGAGCGTGG
AGCACGCCGTGGACGCCACCCTCTACCTGGAGACCGCAGGGCCCTACCGGGTCCTGCGGAGCGCCAAGAACCGCTTCGGC
CCCGTGGGGGAGATCGGGGTCTTCCGCATGGAGGAGGCGGGGCTTCTGGAGGTGGAGAACCCCTCCGAGGCCTTCCTCAA
GGAGCGCCCCCTGGGGGTGCCGGGAAGCGCCGTGGCCCTGGCCCTGGCCGGGGAGCGGGCCTTGGCCCTGGAGGTCCAGG
CCCTGGCGGCCAAAACCCCCTTCCCCGCCCCCCGCAGGGTGGTCCAGGGGCTGGACTCGAGGCGCGTGGACGTGGTCCTC
GCGGTTCTGGAGCGGAGGCTCGGCCTGCCCCTCGCCAACCTGGACATCTACGTGAACCTCGCCGGGGGGCTCAAGGTCCA
GGACCCGGGGCTGGACCTGGCCGTGGCCCTGGCGGTGTACTCCGCCGTGGTGGGCCGCCCCCTGCCCGCCGACCTCGCCC
TGGTGGGGGAGGTGGGCCTGGCCGGGGAGGTGCGGCGGGTGGCGGGGCTGGAGCGGAGGCTTAGGGAGGGGGAGCGGGCG
GGGTTTGGCCGCTTCCTCCACCCGGGGAACCTTAAGCGCCTTCAGGAGGCTGTGGAGGCGTACCTGGCATGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(63-205)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(6-33)

Subunit ChlI of Mg-chelatase (ChlI)

(327-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72L87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

44.893

99.527

0.447
  radA Streptococcus pneumoniae Rx1

44.893

99.527

0.447
  radA Streptococcus pneumoniae D39

44.893

99.527

0.447
  radA Streptococcus pneumoniae TIGR4

44.893

99.527

0.447
  radA Streptococcus mitis SK321

44.893

99.527

0.447
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.953

100

0.447
  radA Streptococcus mitis NCTC 12261

44.656

99.527

0.444