Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   QSV38_RS04495 Genome accession   NZ_CP128410
Coordinates   851966..853258 (-) Length   430 a.a.
NCBI ID   WP_277845226.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 846966..858258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS04485 (QSV38_04485) raiA 850692..851231 (-) 540 WP_289649271.1 ribosome-associated translation inhibitor RaiA -
  QSV38_RS04490 (QSV38_04490) - 851308..851973 (-) 666 WP_289649272.1 ComF family protein -
  QSV38_RS04495 (QSV38_04495) comFA/cflA 851966..853258 (-) 1293 WP_277845226.1 DEAD/DEAH box helicase Machinery gene
  QSV38_RS04500 (QSV38_04500) - 853315..853947 (+) 633 WP_289649273.1 YigZ family protein -
  QSV38_RS04505 (QSV38_04505) cysK 854053..854979 (+) 927 WP_217374634.1 cysteine synthase A -
  QSV38_RS04510 (QSV38_04510) - 855133..855510 (-) 378 WP_217374633.1 S1 RNA-binding domain-containing protein -
  QSV38_RS04515 (QSV38_04515) - 855512..856912 (-) 1401 WP_289649274.1 Cof-type HAD-IIB family hydrolase -
  QSV38_RS04520 (QSV38_04520) - 856964..857605 (-) 642 WP_130555387.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 48511.99 Da        Isoelectric Point: 8.9972

>NTDB_id=847306 QSV38_RS04495 WP_277845226.1 851966..853258(-) (comFA/cflA) [Streptococcus parasuis strain 7500]
MNELENYHGRLFTKYQLTSEERKKAKTISSVVGKNSCFRCGTSFEEENKLPNAAYYCRACLLLGRVRTDEKLYYFPQKDF
SMNACLLWKGALTDWQQRISDGLVANVEKRQATLVHAVTGAGKTEMMYHAVASLINKGGAVCLASPRIDVCIELYKRLQN
DFSVPISLLHGKSDPYFRTPLVVATTHQLLKFYQAFDLVLIDEVDAFPYADNSILYRAADNAVKVDGVLVFLTATSTDEL
DKKVKSGKLQKLSLPRRFHGNPLVVPQKVWFSKFDTYLGKNKLVPKLRNAIQKQRETGYPLLIFVPEISKGLEFATIMEQ
IFPEETIGFVSSQTDNRLEIVEGFRNKEITILISTTILERGVTFPGVDVIVVQADHYLYTSSSLVQISGRVGRSMDRPTG
LLLFFHEGSTRSIEKAIAEIKQMNKEAGYV

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=847306 QSV38_RS04495 WP_277845226.1 851966..853258(-) (comFA/cflA) [Streptococcus parasuis strain 7500]
ATGAATGAACTAGAGAATTACCATGGAAGACTTTTTACTAAATACCAATTAACGTCAGAAGAAAGAAAAAAAGCAAAAAC
AATTTCCAGTGTAGTAGGAAAGAATTCTTGTTTCCGATGCGGTACATCGTTTGAGGAAGAAAACAAGCTGCCAAATGCTG
CGTATTATTGTCGGGCTTGTCTCCTTTTGGGGAGAGTTCGAACAGATGAGAAACTCTACTATTTTCCACAGAAAGATTTT
TCAATGAATGCTTGTCTTCTATGGAAGGGGGCGCTGACCGATTGGCAACAACGAATATCAGATGGACTAGTTGCGAATGT
GGAAAAACGACAAGCAACTCTTGTTCATGCTGTAACAGGTGCGGGCAAAACGGAAATGATGTACCATGCTGTTGCATCAC
TAATTAATAAAGGAGGTGCTGTATGTCTAGCCAGTCCAAGAATTGATGTTTGTATTGAACTATACAAGCGACTACAAAAT
GATTTTTCGGTCCCAATTAGTCTGCTACATGGGAAATCAGACCCATATTTCAGAACGCCACTCGTTGTTGCGACCACTCA
TCAGTTGTTAAAGTTCTACCAGGCATTTGATTTGGTCTTGATCGATGAAGTAGATGCTTTCCCCTATGCAGACAACTCAA
TATTATATCGAGCAGCAGATAATGCAGTTAAAGTAGACGGTGTTTTAGTATTTTTAACAGCAACCTCTACGGATGAATTA
GATAAAAAAGTCAAATCAGGTAAATTGCAAAAACTCAGTCTCCCTAGACGTTTTCATGGAAACCCGCTTGTGGTTCCGCA
AAAGGTCTGGTTTTCCAAATTCGATACATATTTGGGGAAAAATAAATTAGTTCCAAAACTCAGAAACGCCATTCAAAAGC
AAAGAGAAACAGGCTATCCATTACTTATTTTTGTACCAGAAATTTCGAAAGGATTGGAATTTGCAACCATAATGGAACAA
ATCTTTCCAGAAGAAACAATTGGTTTTGTATCGAGTCAGACAGACAATCGGCTTGAAATAGTCGAAGGATTTCGCAACAA
AGAAATTACAATTTTAATTTCTACTACAATCTTAGAGCGTGGTGTAACATTCCCAGGAGTAGATGTCATTGTTGTTCAAG
CCGATCACTACTTATACACGTCATCGAGTCTCGTGCAAATTTCAGGTCGGGTCGGAAGAAGTATGGACCGTCCGACGGGC
TTACTTCTGTTTTTTCATGAAGGAAGTACGCGGTCAATTGAAAAGGCAATTGCAGAAATCAAACAAATGAATAAGGAGGC
AGGTTATGTCTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(288-393)

Type III restriction enzyme, res subunit (ResIII)

(92-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae D39

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae R6

64.554

99.07

0.64
  comFA/cflA Streptococcus pneumoniae TIGR4

64.554

99.07

0.64
  comFA/cflA Streptococcus mitis NCTC 12261

64.554

99.07

0.64
  comFA/cflA Streptococcus mitis SK321

64.319

99.07

0.637
  comFA Lactococcus lactis subsp. cremoris KW2

50.735

94.884

0.481
  comFA Latilactobacillus sakei subsp. sakei 23K

36.597

99.767

0.365