Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QSV38_RS03535 Genome accession   NZ_CP128410
Coordinates   673834..674523 (-) Length   229 a.a.
NCBI ID   WP_217374725.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 7500     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 668834..679523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS03510 (QSV38_03510) - 669315..670028 (-) 714 WP_274504608.1 NADPH-dependent oxidoreductase -
  QSV38_RS03515 (QSV38_03515) dnaI 670025..670924 (-) 900 WP_172036298.1 primosomal protein DnaI -
  QSV38_RS03520 (QSV38_03520) - 670924..672075 (-) 1152 WP_289649178.1 replication initiation/membrane attachment protein -
  QSV38_RS03525 (QSV38_03525) nrdR 672062..672553 (-) 492 WP_277843141.1 transcriptional regulator NrdR -
  QSV38_RS03530 (QSV38_03530) - 672627..673754 (-) 1128 WP_289649179.1 AI-2E family transporter -
  QSV38_RS03535 (QSV38_03535) covR 673834..674523 (-) 690 WP_217374725.1 winged helix-turn-helix domain-containing protein Regulator
  QSV38_RS03540 (QSV38_03540) gndA 674605..676032 (-) 1428 WP_217374724.1 NADP-dependent phosphogluconate dehydrogenase -
  QSV38_RS03545 (QSV38_03545) - 676128..676667 (-) 540 WP_174845818.1 YceD family protein -
  QSV38_RS03550 (QSV38_03550) trxB 676677..677594 (-) 918 WP_217374722.1 thioredoxin-disulfide reductase -
  QSV38_RS03555 (QSV38_03555) - 677607..677831 (-) 225 WP_130554666.1 DUF4059 family protein -
  QSV38_RS03560 (QSV38_03560) - 677850..679193 (-) 1344 WP_216807102.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26229.20 Da        Isoelectric Point: 6.0391

>NTDB_id=847304 QSV38_RS03535 WP_217374725.1 673834..674523(-) (covR) [Streptococcus parasuis strain 7500]
MAKKILIAGKERNLSHFVSMELQKKEYIVDYASTGKEALSLAHETDFDLVLMSFQLSDMSSKKLAKELLAIKPATVMIVV
VEPTEVADHGEDILTYAVFYVVKPFVISDLVEQISDIFRGRDFIETNCKQVHLHAAYRDLKVDFQNRTVTRGDELINLTR
REYDLLATLMNSPEPVSREQLLERVWKYEAASETNVVDVYIRYLRGKLDVPGQASYIRTVRGVGYTMRD

Nucleotide


Download         Length: 690 bp        

>NTDB_id=847304 QSV38_RS03535 WP_217374725.1 673834..674523(-) (covR) [Streptococcus parasuis strain 7500]
ATGGCTAAGAAAATTTTGATTGCTGGGAAAGAGCGTAATCTTTCACATTTTGTTTCCATGGAACTTCAGAAGAAGGAGTA
TATCGTTGATTATGCTTCAACAGGGAAAGAAGCTTTATCACTAGCTCATGAGACAGACTTTGATTTGGTTTTGATGAGTT
TCCAATTATCCGATATGTCCAGCAAGAAGTTGGCTAAGGAGCTTCTTGCAATCAAACCTGCTACGGTGATGATTGTAGTT
GTCGAACCAACAGAAGTGGCTGACCATGGGGAAGATATATTGACGTATGCGGTATTTTACGTTGTGAAGCCATTTGTTAT
TAGTGACTTGGTGGAACAAATTTCCGATATTTTCCGTGGTAGAGATTTTATTGAAACGAATTGTAAACAGGTTCATTTGC
ATGCGGCCTATCGAGATTTAAAAGTTGATTTTCAAAACCGAACGGTCACTCGGGGAGATGAGTTAATCAACTTGACACGG
CGAGAATATGATTTGCTGGCGACGTTGATGAATAGTCCGGAACCAGTTAGCCGAGAACAGCTTCTTGAACGGGTCTGGAA
GTATGAAGCGGCCTCTGAAACCAATGTTGTGGATGTCTATATCCGTTATCTTCGTGGAAAATTAGATGTTCCAGGACAGG
CTTCCTATATTCGGACGGTACGTGGTGTTGGCTATACCATGAGAGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.66

100

0.489
  covR Lactococcus lactis subsp. lactis strain DGCC12653

41.949

100

0.432