Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   QSV38_RS00475 Genome accession   NZ_CP128410
Coordinates   94259..95485 (+) Length   408 a.a.
NCBI ID   WP_130555333.1    Uniprot ID   A0A4Q8L0K7
Organism   Streptococcus parasuis strain 7500     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 89259..100485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSV38_RS00450 (QSV38_00450) - 90539..90874 (+) 336 WP_171989804.1 hypothetical protein -
  QSV38_RS00455 (QSV38_00455) - 91035..91994 (+) 960 WP_217373806.1 ROK family glucokinase -
  QSV38_RS00460 (QSV38_00460) - 92121..92444 (+) 324 WP_289648797.1 hypothetical protein -
  QSV38_RS00465 (QSV38_00465) - 92497..93336 (+) 840 WP_130555330.1 thymidylate synthase -
  QSV38_RS00470 (QSV38_00470) - 93549..94061 (+) 513 WP_289648798.1 dihydrofolate reductase -
  QSV38_RS00475 (QSV38_00475) clpX 94259..95485 (+) 1227 WP_130555333.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QSV38_RS00480 (QSV38_00480) yihA 95546..96133 (+) 588 WP_289648800.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  QSV38_RS00485 (QSV38_00485) ndk 96155..96568 (+) 414 WP_289648802.1 nucleoside-diphosphate kinase -
  QSV38_RS00490 (QSV38_00490) lepA 96666..98498 (+) 1833 WP_289648803.1 translation elongation factor 4 -
  QSV38_RS00495 (QSV38_00495) - 98548..98730 (-) 183 WP_002934978.1 4-oxalocrotonate tautomerase -
  QSV38_RS00500 (QSV38_00500) - 98862..99494 (+) 633 WP_289648805.1 hypothetical protein -
  QSV38_RS00505 (QSV38_00505) - 99588..100199 (+) 612 WP_289648806.1 excalibur calcium-binding domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45477.05 Da        Isoelectric Point: 4.5673

>NTDB_id=847292 QSV38_RS00475 WP_130555333.1 94259..95485(+) (clpX) [Streptococcus parasuis strain 7500]
MAIKHTQELIYCSFCGKNQEEVKKIIAGNNVFICNECVELAQEIIREELAEEVLTDLADTPKPQELLNILNNYVIGQDRA
KRALAVAVYNHYKRINFQDSRDENDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVENIL
LKLLQAADFNIDRAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQVDTKN
ILFIVGGAFDGIEEIVKQRLGEKIIGFGQNNRAIDEKESYMQHIIADDIQKFGIIPELIGRLPVLAALDQLTTEDLIRIL
TEPKNALVKQYQTLLSYDNVELEFDQDALEEIAKKAIERKTGARGLRSIIEETMMDVMFEVPSQENVKRVRVTKDAVDGK
EKPLLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=847292 QSV38_RS00475 WP_130555333.1 94259..95485(+) (clpX) [Streptococcus parasuis strain 7500]
ATGGCTATCAAGCATACACAAGAGCTTATCTATTGCTCATTTTGTGGTAAAAACCAAGAAGAAGTTAAAAAAATTATTGC
AGGAAATAATGTTTTCATTTGTAATGAGTGTGTTGAGTTAGCTCAAGAAATCATTCGTGAAGAATTGGCTGAAGAAGTAC
TGACAGATTTGGCAGACACACCAAAGCCACAAGAATTACTCAATATTTTAAACAATTATGTCATTGGACAAGATCGTGCT
AAACGTGCGTTGGCAGTGGCTGTTTATAATCACTACAAACGTATTAATTTCCAAGATAGTCGCGATGAAAATGATGTTGA
TTTGCAAAAATCTAACATCTTGATGATTGGCCCGACTGGTTCAGGAAAAACCTTCCTAGCTCAGACCTTGGCTAAAAGTT
TGAATGTCCCGTTTGCTATTGCTGATGCGACCGCTCTTACTGAGGCTGGTTATGTGGGTGAAGATGTTGAAAATATTTTA
CTTAAATTATTGCAGGCAGCAGATTTTAACATTGACCGTGCTGAAAGAGGTATCATCTATGTGGATGAAATTGATAAAAT
TGCCAAAAAAGGTGAAAATGTGTCCATTACCCGTGACGTCTCGGGTGAAGGTGTCCAACAAGCTCTCTTAAAAATTATTG
AAGGAACCGTTGCCAGTGTACCTCCACAAGGTGGACGAAAACACCCTAATCAAGAAATGATTCAAGTCGATACGAAAAAC
ATTCTTTTCATCGTTGGCGGTGCGTTTGATGGTATCGAGGAAATTGTTAAGCAACGATTAGGAGAGAAAATCATTGGTTT
TGGTCAAAACAATCGTGCTATTGATGAAAAAGAATCATATATGCAACATATCATTGCTGATGATATTCAAAAATTTGGTA
TTATTCCTGAGTTGATTGGACGATTACCTGTTTTGGCAGCCTTAGATCAATTAACGACAGAGGATTTGATTCGTATTTTG
ACTGAGCCGAAGAATGCTTTGGTAAAACAGTACCAAACTCTTTTATCCTACGATAATGTGGAGTTAGAATTTGACCAGGA
TGCCTTGGAGGAAATTGCCAAAAAGGCTATTGAACGGAAAACAGGTGCACGGGGACTTCGTTCGATTATTGAAGAAACCA
TGATGGATGTGATGTTTGAAGTTCCTAGTCAAGAGAATGTAAAACGTGTTCGTGTTACAAAAGATGCAGTAGATGGTAAG
GAAAAACCTTTGCTAGAAACTGCTTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q8L0K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

84.108

100

0.843
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.529

0.569