Detailed information NTG0847280

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QQA12_RS12185
• Genome accession: NZ_CP128405
• Coordinates: 2694918..2696285 (+)
• Length: 455 a.a.
• NCBI ID: WP_054667220.1
• Uniprot ID: A0A0S1B260
• Organism: Stenotrophomonas sp. 17(2023)
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2689918..2701285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQA12_RS12165	-	2690148..2690831 (+)	684	WP_054667215.1	DUF3108 domain-containing protein	-
QQA12_RS12170	sucD	2690908..2691783 (-)	876	WP_054667217.1	succinate--CoA ligase subunit alpha	-
QQA12_RS12175	sucC	2691808..2692980 (-)	1173	WP_054667218.1	ADP-forming succinate--CoA ligase subunit beta	-
QQA12_RS12180	-	2693241..2694854 (+)	1614	WP_226049440.1	ATP-binding protein	-
QQA12_RS12185	pilR	2694918..2696285 (+)	1368	WP_054667220.1	sigma-54 dependent transcriptional regulator	Regulator
QQA12_RS12190	-	2696463..2698391 (-)	1929	WP_226049441.1	ATP-binding protein	-
QQA12_RS12195	-	2698394..2700586 (-)	2193	WP_233324879.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49030.14 Da
• Isoelectric Point: 6.2561

>NTDB_id=847280 QQA12_RS12185 WP_054667220.1 2694918..2696285(+) (pilR) [Stenotrophomonas sp. 17(2023)]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLGSNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGMVKHALELNNSERVAQPAAPESASRLLGESQAMSDLRSTIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGSATEVPVDVRILSATHKDLAVLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQLPTPLLSPSALDALGGYAFPGNVRELENVLERALALADGDSIGASDLRLPTPRGDAGSASEEAPAD
IDAGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=847280 QQA12_RS12185 WP_054667220.1 2694918..2696285(+) (pilR) [Stenotrophomonas sp. 17(2023)]
ATGAACGTGACGCATAGCGCGCTGGTCGTCGACGACGAACGGGACATCCGCGAACTCCTGGTCCTCACCCTCGGCAGGAT
GGGACTGCGCATCAGTACCGCCGCCAATCTGGCCGAAGCCCGCGAACTGCTGGGCAGCAACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCACGCGACCATCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAGGCGCTGAAGGCAGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCGGCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAGCTCAACAACAGCGAGCGCGTGGCGCAGCCCGCCGCAC
CGGAAAGCGCCTCGCGCCTGCTCGGCGAATCGCAGGCGATGTCCGACCTGCGCAGCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGACCAGGGCGCGCG
CGCGGCCGGGCCGTTCATCCCGGTCAACTGCGGCGCCATCCCGGGCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCGCACGCGGACAAACCGGGACTGTTCCAGGCCGCGCATGGCGGGACCCTGTTCCTGGACGAA
GTCGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCTCGGC
CACCGAGGTACCGGTGGACGTGCGCATCCTGTCGGCCACGCACAAGGACCTGGCGGTGCTGGTGCAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTCCCCCCGCTGCGCGAGCGGCGCGGCGACCTGCCGCAG
CTGGCCGCGGCCATCCTCAGCCGGCTGGCGCGCTCGCAGCAGCTGCCCACGCCGCTGTTGTCGCCCTCGGCGCTGGACGC
CCTGGGCGGTTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACGTACTGGAACGCGCGCTCGCCCTGGCCGATGGCG
ACAGCATCGGCGCCAGCGACCTGCGCCTGCCGACCCCGCGCGGCGATGCCGGCAGCGCGAGCGAAGAAGCTCCGGCCGAC
ATCGATGCCGGCAATGCCGCCCTTCCCTCGTACATCGAACAGATGGAACGCGCGGCCATCCAGAAGGCGCTGGAAGAAAA
CCGCTGGAACCGGACCCGCACCGCCGCGCAGTTGGGCATCACCTTCCGGGCGCTGCGCTACAAGCTCAAGAAGCTGGGCA
TGGACTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (8-116)

3D structure

• AlphaFold DB: A0A0S1B260

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	64.302	99.121	0.637
pilR	Acinetobacter baumannii strain A118	48.913	100	0.495