Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VM636_RS23740 Genome accession   NZ_CP144555
Coordinates   5397573..5398214 (+) Length   213 a.a.
NCBI ID   WP_030419928.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5392573..5403214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS23730 (VM636_23730) - 5395050..5395850 (-) 801 WP_078855875.1 transglycosylase SLT domain-containing protein -
  VM636_RS23735 (VM636_23735) - 5396435..5397580 (+) 1146 WP_030419929.1 GAF domain-containing sensor histidine kinase -
  VM636_RS23740 (VM636_23740) vraR 5397573..5398214 (+) 642 WP_030419928.1 response regulator transcription factor Regulator
  VM636_RS23745 (VM636_23745) chpE 5398393..5398638 (+) 246 WP_030419927.1 chaplin ChpE -
  VM636_RS23750 (VM636_23750) - 5399118..5399906 (-) 789 WP_053912676.1 hypothetical protein -
  VM636_RS23755 (VM636_23755) - 5400056..5400853 (+) 798 WP_030419925.1 ABC transporter ATP-binding protein -
  VM636_RS23760 (VM636_23760) - 5400915..5401346 (+) 432 WP_053912677.1 NfeD family protein -
  VM636_RS23765 (VM636_23765) - 5401493..5402452 (+) 960 WP_030419923.1 SPFH domain-containing protein -
  VM636_RS23770 (VM636_23770) - 5402570..5403076 (-) 507 WP_030419922.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23020.41 Da        Isoelectric Point: 6.5027

>NTDB_id=847147 VM636_RS23740 WP_030419928.1 5397573..5398214(+) (vraR) [Streptomyces sp. SCSIO 75703]
MADAIKVLLVDDHQVVRRGLRTFLEVQGDIAVVGEAADGAEGVERARELRPDVILMDIRMPGMDGIEALRRLRELDHPAR
VLIVTSFTERRTVVPALRAGAAGYVYKDVDPEALAGAIRSVHAGHVLLQPEVAGALLSQEESGSGQGRAGSLTDREREVL
GLIADGRSNREIARSLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGMAG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=847147 VM636_RS23740 WP_030419928.1 5397573..5398214(+) (vraR) [Streptomyces sp. SCSIO 75703]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTCGTCCGCCGGGGCCTGCGCACCTTCCTGGAGGTCCA
GGGCGACATCGCGGTGGTCGGCGAGGCCGCCGACGGTGCGGAGGGCGTCGAGCGCGCCCGCGAGCTGCGGCCCGACGTGA
TCCTCATGGACATCCGGATGCCCGGCATGGACGGCATCGAGGCGCTGCGCCGGCTCCGTGAGCTGGACCACCCCGCGCGC
GTACTGATCGTCACGAGCTTCACCGAGCGGCGCACGGTCGTCCCGGCCCTGCGCGCGGGCGCGGCCGGCTACGTGTACAA
GGACGTCGACCCCGAGGCGCTGGCCGGCGCCATCCGCTCCGTCCACGCGGGGCACGTCCTGCTCCAGCCCGAGGTCGCCG
GGGCGCTGCTCTCCCAGGAGGAGTCCGGTTCCGGCCAGGGCCGGGCGGGCTCCCTCACGGACCGGGAGCGCGAGGTACTG
GGCCTGATCGCGGACGGCCGGTCCAACCGGGAGATCGCCCGCTCCCTGGTGCTCTCGGAGAAGACGGTGAAGACGCACGT
CTCGAACATCCTCATGAAGCTCGACCTCGCGGACCGCACCCAGGCCGCCCTGTGGGCCGTACGGCACGGCATGGCGGGGT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

98.122

0.441
  degU Bacillus subtilis subsp. subtilis str. 168

37.557

100

0.39