Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VM636_RS13360 Genome accession   NZ_CP144555
Coordinates   3078316..3079725 (+) Length   469 a.a.
NCBI ID   WP_030421974.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 75703     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3073316..3084725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VM636_RS13345 (VM636_13345) - 3074098..3075048 (-) 951 WP_030421977.1 Ppx/GppA phosphatase family protein -
  VM636_RS13350 (VM636_13350) - 3075158..3076027 (+) 870 WP_030421976.1 hypothetical protein -
  VM636_RS13355 (VM636_13355) - 3076085..3077839 (-) 1755 WP_030421975.1 BACON domain-containing protein -
  VM636_RS13360 (VM636_13360) radA 3078316..3079725 (+) 1410 WP_030421974.1 DNA repair protein RadA Machinery gene
  VM636_RS13365 (VM636_13365) disA 3079808..3080932 (+) 1125 WP_030421973.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  VM636_RS13370 (VM636_13370) - 3080972..3081814 (-) 843 WP_199809427.1 hypothetical protein -
  VM636_RS13375 (VM636_13375) - 3081989..3082639 (+) 651 WP_199809426.1 phosphatase PAP2 family protein -
  VM636_RS13380 (VM636_13380) - 3082957..3083934 (+) 978 WP_030421970.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49885.02 Da        Isoelectric Point: 7.7533

>NTDB_id=847119 VM636_RS13360 WP_030421974.1 3078316..3079725(+) (radA) [Streptomyces sp. SCSIO 75703]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGTPAVRTTAPGRVTTSALPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVRLSEPAADLAVALALASAASDVPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPGDPVRVPEGMKVLEVADIGDALRVLPRSRRREAPRETEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=847119 VM636_RS13360 WP_030421974.1 3078316..3079725(+) (radA) [Streptomyces sp. SCSIO 75703]
ATGGCTGCCCGTACGAAGACCACCAAGGACCGGCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCACGCCCGCCGTCCGCACCACCGCCCCAGGGC
GCGTGACCACCTCCGCCCTCCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGACTGGTGCCCGGCGCCGTGGTCCTCGTCGCCGGCGAGCCCGGTGTGGGCAAGTCCACGCT
GCTGCTGGACGTCGCCGCCAAGTCGGCCAGCGACGAGCACCGCACGCTGTACGTCACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCCACGCCATCGACGACCACCTCTATCTGGCCGCCGAGACCGACCTCGCCGCCGTCCTC
GGCCACCTGGACGCGGTCAAGCCCTCCCTGCTGATCCTCGACTCGGTGCAGACGGTCGCCTCCCCCGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGGGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TCGTGGGACACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGCCTGCTGGAGCACCTGGTCGACGTCGTCCTGCACTTC
GAGGGCGACCGGCACGCCCGCCTCCGCCTGGTCCGCGGTGTGAAGAACCGCTACGGCACCACCGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCAGCGGCCTCTTCCTCACCCGCCGTGCCGAGCCGGTGCCCG
GCACCTGTCTCACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTGGCCGAGGTGCAGGCGCTCACCGTCGACTCCCAGATC
CCCTCCCCGCGCCGGACCACGTCCGGTCTGGAGACCTCCCGTGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGACG
CATCAGCGCCCTCGGCAAGCGGGACATCTACTCCGCCACGGTCGGCGGGGTGAGGCTCTCCGAGCCGGCCGCCGACCTCG
CCGTGGCGCTCGCCCTCGCCAGTGCCGCGAGCGACGTCCCGCTCCCGAAGAACCTGGTCGCCATCGGCGAGGTCGGGCTC
GCCGGGGAGGTGCGGCGCGTCACCGGCGTCCAGCGCCGGCTGGCCGAGGCGCACCGGCTGGGCTTCACACATGCCCTCGT
ACCGGGCGATCCGGTCCGGGTCCCCGAGGGCATGAAGGTTCTGGAAGTGGCGGACATAGGGGACGCGCTGCGGGTCCTGC
CGCGGTCCCGTCGCCGGGAGGCCCCACGGGAGACGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(370-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

42.984

95.736

0.412
  radA Streptococcus pneumoniae D39

42.984

95.736

0.412
  radA Streptococcus pneumoniae R6

42.984

95.736

0.412
  radA Streptococcus pneumoniae TIGR4

42.984

95.736

0.412
  radA Streptococcus mitis NCTC 12261

42.984

95.736

0.412
  radA Streptococcus mitis SK321

42.984

95.736

0.412
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.478

96.375

0.409