Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   QSJ13_RS11270 Genome accession   NZ_CP128372
Coordinates   2342890..2343363 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain XH2146     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2337890..2348363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ13_RS11255 (QSJ13_11270) pilX 2340519..2341337 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QSJ13_RS11260 (QSJ13_11275) pilW 2341334..2342335 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  QSJ13_RS11265 (QSJ13_11280) pilV 2342336..2342896 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QSJ13_RS11270 (QSJ13_11285) fimU 2342890..2343363 (-) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  QSJ13_RS11275 (QSJ13_11290) ispH 2343533..2344483 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QSJ13_RS11280 (QSJ13_11295) gmk 2344606..2345235 (+) 630 WP_000015936.1 guanylate kinase -
  QSJ13_RS11285 (QSJ13_11300) rpoZ 2345308..2345586 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QSJ13_RS11290 (QSJ13_11305) - 2345625..2345755 (+) 131 Protein_2215 hypothetical protein -
  QSJ13_RS11295 (QSJ13_11310) - 2345795..2347900 (+) 2106 WP_020753492.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=847068 QSJ13_RS11270 WP_001214068.1 2342890..2343363(-) (fimU) [Acinetobacter baumannii strain XH2146]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=847068 QSJ13_RS11270 WP_001214068.1 2342890..2343363(-) (fimU) [Acinetobacter baumannii strain XH2146]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994