Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   QSJ13_RS11255 Genome accession   NZ_CP128372
Coordinates   2340519..2341337 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH2146     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2335519..2346337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSJ13_RS11240 (QSJ13_11255) pilE 2335736..2336161 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  QSJ13_RS11245 (QSJ13_11260) pilY2 2336158..2336640 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  QSJ13_RS11250 (QSJ13_11265) pilY1 2336653..2340507 (-) 3855 WP_000768944.1 PilC/PilY family type IV pilus protein Machinery gene
  QSJ13_RS11255 (QSJ13_11270) pilX 2340519..2341337 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  QSJ13_RS11260 (QSJ13_11275) pilW 2341334..2342335 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  QSJ13_RS11265 (QSJ13_11280) pilV 2342336..2342896 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  QSJ13_RS11270 (QSJ13_11285) fimU 2342890..2343363 (-) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  QSJ13_RS11275 (QSJ13_11290) ispH 2343533..2344483 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QSJ13_RS11280 (QSJ13_11295) gmk 2344606..2345235 (+) 630 WP_000015936.1 guanylate kinase -
  QSJ13_RS11285 (QSJ13_11300) rpoZ 2345308..2345586 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  QSJ13_RS11290 (QSJ13_11305) - 2345625..2345755 (+) 131 Protein_2215 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=847065 QSJ13_RS11255 WP_000149374.1 2340519..2341337(-) (pilX) [Acinetobacter baumannii strain XH2146]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=847065 QSJ13_RS11255 WP_000149374.1 2340519..2341337(-) (pilX) [Acinetobacter baumannii strain XH2146]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993