Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   QQM35_RS06510 Genome accession   NZ_CP128355
Coordinates   1293640..1294203 (-) Length   187 a.a.
NCBI ID   WP_251519447.1    Uniprot ID   -
Organism   Staphylococcus hsinchuensis strain H164     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288640..1299203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM35_RS06485 (QQM35_06475) - 1288835..1289734 (+) 900 WP_251519442.1 hypothetical protein -
  QQM35_RS06490 (QQM35_06480) - 1290154..1291512 (+) 1359 WP_251519443.1 TrkH family potassium uptake protein -
  QQM35_RS06495 (QQM35_06485) - 1291661..1293169 (+) 1509 WP_342610283.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  QQM35_RS06510 (QQM35_06500) comK/comK1 1293640..1294203 (-) 564 WP_251519447.1 competence protein ComK Regulator
  QQM35_RS06515 (QQM35_06505) - 1294456..1294674 (+) 219 WP_251519449.1 IDEAL domain-containing protein -
  QQM35_RS06520 (QQM35_06510) - 1294753..1295742 (-) 990 WP_251519451.1 lipoate--protein ligase -
  QQM35_RS06525 (QQM35_06515) - 1295939..1296124 (+) 186 WP_251519453.1 DUF2187 family protein -
  QQM35_RS06530 (QQM35_06520) - 1296130..1296732 (+) 603 WP_251519455.1 CPBP family glutamic-type intramembrane protease -
  QQM35_RS06535 (QQM35_06525) - 1296857..1297099 (-) 243 WP_251519457.1 DUF3923 family protein -
  QQM35_RS06540 (QQM35_06530) - 1297229..1298362 (-) 1134 WP_251519459.1 CapA family protein -
  QQM35_RS06545 (QQM35_06535) - 1298741..1299061 (+) 321 WP_251519461.1 metalloregulator ArsR/SmtB family transcription factor -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 22108.43 Da        Isoelectric Point: 9.2546

>NTDB_id=846985 QQM35_RS06510 WP_251519447.1 1293640..1294203(-) (comK/comK1) [Staphylococcus hsinchuensis strain H164]
MNQQYIIKKGDMVLQPCNLTIGPYAGTCIYRYQEDNYTVKDRTHKIIERSCRFYGSSYVFKKEDTIRITGINSKPPILFT
PLFPTYFFPTHSDRKEENTWINIHYVSHIKPMKEKKCKVIFVDKQSITVNISAHSMQHQYLNGIYYYYMMDRAAKVATFD
PESPIDYSKSQINIYEALAKYSLFEQK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=846985 QQM35_RS06510 WP_251519447.1 1293640..1294203(-) (comK/comK1) [Staphylococcus hsinchuensis strain H164]
ATGAATCAACAATACATTATTAAAAAAGGAGACATGGTGCTCCAGCCATGTAATTTAACCATTGGCCCTTACGCAGGAAC
ATGTATTTACAGGTATCAAGAAGATAATTACACCGTAAAAGACCGTACACATAAAATAATAGAGAGGTCTTGCCGATTTT
ATGGTAGCAGTTATGTCTTTAAGAAAGAAGATACGATTCGAATTACAGGCATTAATAGTAAGCCCCCTATTTTATTCACT
CCACTTTTTCCTACTTATTTTTTCCCTACACACTCTGACAGAAAAGAAGAAAACACTTGGATTAACATTCATTACGTAAG
TCATATTAAGCCTATGAAAGAGAAAAAATGTAAAGTGATTTTCGTCGACAAACAATCTATCACAGTAAATATTTCAGCTC
ACAGTATGCAACATCAATATTTAAATGGCATTTACTATTATTATATGATGGATCGTGCAGCAAAAGTTGCAACTTTTGAT
CCCGAATCCCCTATTGATTATTCTAAATCTCAGATAAATATCTACGAAGCTTTAGCAAAATACTCATTGTTTGAACAAAA
GTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(3-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

52.459

97.861

0.513
  comK/comK1 Staphylococcus aureus N315

52.459

97.861

0.513