Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQM35_RS00165 Genome accession   NZ_CP128355
Coordinates   30506..30910 (-) Length   134 a.a.
NCBI ID   WP_342610403.1    Uniprot ID   -
Organism   Staphylococcus hsinchuensis strain H164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 25506..35910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQM35_RS00140 (QQM35_00140) thiE 26062..26703 (-) 642 WP_342610401.1 thiamine phosphate synthase -
  QQM35_RS00145 (QQM35_00145) thiM 26706..27503 (-) 798 WP_251518269.1 hydroxyethylthiazole kinase -
  QQM35_RS00150 (QQM35_00150) thiD 27493..28314 (-) 822 WP_251518268.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QQM35_RS00155 (QQM35_00155) tenA 28307..28996 (-) 690 WP_251518267.1 thiaminase II -
  QQM35_RS00160 (QQM35_00160) - 29324..30016 (-) 693 WP_342610402.1 transglycosylase family protein -
  QQM35_RS00165 (QQM35_00165) ssb 30506..30910 (-) 405 WP_342610403.1 single-stranded DNA-binding protein Machinery gene
  QQM35_RS00170 (QQM35_00170) - 31100..31546 (+) 447 WP_251518264.1 YwpF-like family protein -
  QQM35_RS00175 (QQM35_00175) fabZ 31765..32205 (-) 441 WP_251518263.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QQM35_RS00180 (QQM35_00180) murA 32270..33535 (-) 1266 WP_251518262.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QQM35_RS00185 (QQM35_00185) - 33625..33858 (-) 234 WP_251518261.1 DUF1146 family protein -
  QQM35_RS00190 (QQM35_00190) - 34221..34625 (-) 405 WP_251518260.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15629.77 Da        Isoelectric Point: 5.6934

>NTDB_id=846975 QQM35_RS00165 WP_342610403.1 30506..30910(-) (ssb) [Staphylococcus hsinchuensis strain H164]
MINNIVIVGRLTKDPKLFEKEETYLTTFCVAVERNYKDRNQNNIVGFIYCKSFGKVAQNIVKYVNQGSLVAITGQMQSRK
YVKDDQTHFISELYVETIKFLTSKHKDEIEPHTTKDNQEILEDTIQDSDLYEII

Nucleotide


Download         Length: 405 bp        

>NTDB_id=846975 QQM35_RS00165 WP_342610403.1 30506..30910(-) (ssb) [Staphylococcus hsinchuensis strain H164]
ATGATTAATAATATCGTTATCGTCGGACGATTGACGAAAGACCCAAAGTTGTTCGAAAAAGAGGAAACCTATTTAACAAC
ATTTTGTGTAGCTGTCGAAAGGAATTATAAGGATAGAAATCAAAATAACATAGTTGGTTTTATTTATTGTAAATCTTTTG
GCAAGGTAGCTCAGAACATTGTTAAGTATGTCAATCAAGGATCGCTTGTCGCAATAACTGGTCAAATGCAATCAAGAAAA
TACGTTAAAGACGATCAAACACATTTTATTTCCGAGTTATACGTTGAAACAATTAAGTTTTTAACTTCAAAGCACAAGGA
TGAAATCGAACCCCACACTACAAAAGATAATCAAGAAATCCTCGAAGACACGATACAAGACAGTGACTTGTACGAAATCA
TTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

58.14

96.269

0.56
  ssb Staphylococcus aureus MW2

57.364

96.269

0.552