Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QSU95_RS22795 Genome accession   NZ_CP128205
Coordinates   1571152..1572333 (-) Length   393 a.a.
NCBI ID   WP_286212932.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1566152..1577333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS22790 (QSU95_22790) cqsS 1568940..1570991 (+) 2052 WP_286212931.1 hybrid sensor histidine kinase/response regulator Regulator
  QSU95_RS22795 (QSU95_22795) cqsA 1571152..1572333 (-) 1182 WP_286212932.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QSU95_RS22800 (QSU95_22800) - 1572551..1573510 (-) 960 WP_004728184.1 TDT family transporter -
  QSU95_RS22805 (QSU95_22805) clcA 1573671..1575068 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  QSU95_RS22810 (QSU95_22810) - 1575539..1576534 (+) 996 WP_286212934.1 GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43539.49 Da        Isoelectric Point: 6.8548

>NTDB_id=846801 QSU95_RS22795 WP_286212932.1 1571152..1572333(-) (cqsA) [Vibrio furnissii strain VFBJ05]
MKSDAKNNRLPDSIQDRLNFFVRDLIESNQNGKHLVLGKRPSQGDIVLQSNDYLSLANHPLIKARLKQAIDTTHDSVFMS
AIFLQDDETKPSLEHQLAEFVNFDSCLLSQSGWNANTSLLQTVCAPGSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLRKQIQRHGPGLIVVDSIYSTIGTLAPLTELVHIAKETQCAILVDESHSLGTHGDKGAGLLAELGLSDQVDFMTASLAK
TFAYRAGVIWANNNANQCIPFVGYPAIFSSTILPYEIAALEATLEVIKSANDRRKNLFHNAQLLSQGLNKIGIHIRSQSQ
IIALETGDEKNTEKVRDYLEDNGVFGAVFCRPATSKTKNIIRLSLTSAVTEQQIDRILSVCQSAVKRGDMIFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=846801 QSU95_RS22795 WP_286212932.1 1571152..1572333(-) (cqsA) [Vibrio furnissii strain VFBJ05]
ATGAAATCTGATGCCAAAAATAATCGGTTACCTGACTCGATTCAGGACCGTTTGAATTTCTTCGTTCGCGATTTAATTGA
AAGCAATCAAAACGGTAAACATCTGGTATTAGGAAAGCGCCCCTCCCAAGGTGATATTGTTTTACAAAGTAACGATTACC
TCAGCCTCGCCAACCATCCATTGATCAAGGCGCGTTTAAAACAGGCCATTGATACCACGCACGACAGTGTGTTTATGTCG
GCCATTTTCTTACAAGATGATGAAACCAAACCTAGCCTAGAGCACCAACTGGCTGAGTTTGTCAATTTCGACTCGTGTCT
GTTGTCTCAGTCGGGTTGGAATGCCAATACGTCGCTACTGCAGACCGTTTGCGCACCGGGCAGCAATGTCTATATCGACT
TCTTTGCGCACATGTCGATGTGGGAAGGTGCGCGTTATGCCAATGCGAACATTCATCCGTTCATGCATAACAATTGTGAC
CATCTGCGCAAACAGATCCAACGTCATGGCCCTGGGCTCATTGTGGTCGATTCCATCTACAGCACCATTGGTACGCTTGC
GCCGCTGACTGAATTGGTTCATATCGCCAAAGAGACTCAGTGCGCCATATTGGTCGATGAATCGCATTCACTTGGCACCC
ATGGCGATAAAGGCGCTGGCTTACTGGCGGAATTGGGGCTCTCCGATCAGGTCGATTTTATGACCGCGAGTTTGGCAAAA
ACATTTGCGTATCGTGCGGGGGTTATTTGGGCAAATAACAACGCGAATCAATGTATTCCTTTTGTGGGCTATCCGGCGAT
ATTCAGCTCGACGATATTACCGTATGAAATAGCCGCATTAGAAGCCACATTAGAGGTCATTAAATCGGCCAACGATCGTC
GCAAGAATTTATTTCACAATGCACAACTATTATCACAAGGATTAAATAAAATTGGTATTCACATTCGCAGCCAATCCCAA
ATTATCGCATTGGAAACAGGCGATGAAAAAAATACAGAAAAGGTCCGTGATTATTTAGAAGACAATGGCGTTTTCGGCGC
CGTATTTTGTCGACCGGCCACCTCGAAAACGAAAAATATTATTCGCTTGTCATTAACCAGTGCCGTTACGGAACAACAGA
TCGACCGCATTTTGTCGGTGTGTCAAAGCGCGGTAAAACGGGGGGATATGATCTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.312

97.964

0.669