Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   QSU95_RS22790 Genome accession   NZ_CP128205
Coordinates   1568940..1570991 (+) Length   683 a.a.
NCBI ID   WP_286212931.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563940..1575991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS22780 (QSU95_22780) - 1564613..1565755 (+) 1143 WP_286212929.1 exonuclease SbcCD subunit D -
  QSU95_RS22785 (QSU95_22785) - 1565759..1568800 (+) 3042 WP_286212930.1 SMC family ATPase -
  QSU95_RS22790 (QSU95_22790) cqsS 1568940..1570991 (+) 2052 WP_286212931.1 hybrid sensor histidine kinase/response regulator Regulator
  QSU95_RS22795 (QSU95_22795) cqsA 1571152..1572333 (-) 1182 WP_286212932.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QSU95_RS22800 (QSU95_22800) - 1572551..1573510 (-) 960 WP_004728184.1 TDT family transporter -
  QSU95_RS22805 (QSU95_22805) clcA 1573671..1575068 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78686.49 Da        Isoelectric Point: 6.1337

>NTDB_id=846800 QSU95_RS22790 WP_286212931.1 1568940..1570991(+) (cqsS) [Vibrio furnissii strain VFBJ05]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRSFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPVQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSGHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLDIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=846800 QSU95_RS22790 WP_286212931.1 1568940..1570991(+) (cqsS) [Vibrio furnissii strain VFBJ05]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCGCTGCTGCTGCGTAGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTACCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTACATGATGCTGATGAACGATTGGTCCACGGTGTGGGCAATGTCATTCATGGCATC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCTCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGCTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTTCTGTTCACTTAC
GTGTTCGGAAATCTGTTCTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATCGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGTAACCCGCTCAGTGCATTGAAATCGTCAGTTGATGTGTTGCGTTCGATTTTGCCCGTACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGATGGACAGGATTTGACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTCACGTCTATCGATGAAAACCGCGTGTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCATGCCCTGCATTCCTTCTCGTACAAACGTGCGTTGGATCGTCAGGCCGTCA
CGCTCAATGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCCTGCTGAAATTTGCCCTCTACAACTTATTGAAAAAT
GCCTTTTATTATCAGAACAGTGGACATTTTCATATCGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
GCGAGATAACGGCGTGGGCATCGCCCCAGACCGCTTGGATGACATCTTTAAGGACTTCTATACCTTTGGCAAAAATGGCA
GTTATGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGCGGCAACATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGCGTCTCACACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACACGTGAAGAATACGAGTTTGAATACGATATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTGGTCGAGCTGGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGACATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTACTGTTTGAGGTGGATGACGTTGCGCCGGATCACAATGTTGTGCCGATCAAACAA
CCAAAATATGAACGCCGTATTCTGGTGGTGGATGACAACCAATCCCTGCGCACATTCACAGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAAGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGTGTGATTCGGGATTCCAACAAGCCGTACTGCCACATT
CCGATTGTTGGCCACACTGGGGATAATAGCCCGCTGACGATTGAGAAAATCCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

58.918

100

0.59