Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   V3I11_RS07765 Genome accession   NZ_CP144280
Coordinates   1546105..1547112 (-) Length   335 a.a.
NCBI ID   WP_042599469.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P3_EMO     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1541105..1552112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3I11_RS07735 (V3I11_07735) ruvX 1541246..1541665 (+) 420 WP_005686741.1 Holliday junction resolvase RuvX -
  V3I11_RS07740 (V3I11_07740) rdgC 1541715..1542623 (-) 909 WP_021035695.1 recombination-associated protein RdgC -
  V3I11_RS07745 (V3I11_07745) proC 1542689..1543504 (+) 816 WP_021035694.1 pyrroline-5-carboxylate reductase -
  V3I11_RS07750 (V3I11_07750) - 1543504..1544670 (+) 1167 WP_021035693.1 3-phenylpropionate MFS transporter -
  V3I11_RS07755 (V3I11_07755) xerD 1544700..1545593 (+) 894 WP_005654087.1 site-specific tyrosine recombinase XerD -
  V3I11_RS07760 (V3I11_07760) - 1545766..1546053 (+) 288 WP_042599470.1 DUF5339 domain-containing protein -
  V3I11_RS07765 (V3I11_07765) ruvB 1546105..1547112 (-) 1008 WP_042599469.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  V3I11_RS07770 (V3I11_07770) ruvA 1547120..1547734 (-) 615 WP_038440774.1 Holliday junction branch migration protein RuvA -
  V3I11_RS07775 (V3I11_07775) ruvC 1547797..1548369 (-) 573 WP_011271984.1 crossover junction endodeoxyribonuclease RuvC -
  V3I11_RS07780 (V3I11_07780) - 1548416..1549156 (-) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  V3I11_RS07785 (V3I11_07785) nudB 1549168..1549641 (-) 474 WP_011271985.1 dihydroneopterin triphosphate diphosphatase -
  V3I11_RS07790 (V3I11_07790) aspS 1549663..1551429 (-) 1767 WP_042594297.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37062.43 Da        Isoelectric Point: 4.8547

>NTDB_id=846798 V3I11_RS07765 WP_042599469.1 1546105..1547112(-) (ruvB) [Haemophilus influenzae strain P3_EMO]
MIEADRIISGQAKLDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVNVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSKTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=846798 V3I11_RS07765 WP_042599469.1 1546105..1547112(-) (ruvB) [Haemophilus influenzae strain P3_EMO]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGCTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGCTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGCGATTTGGCTGCAATGCTTACTAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACCTCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTTGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTACGCAATGGGGGA
GTAATTTCGGTAAATGTGGCAAAACAAGCACTTTCAATGTTGGATGTAGATGATGCTGGATTTGATTATTTAGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGACCTGTGGGGCTGGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGGTTTTTACAAAGAACGCCACGTGGACGTATTGCA
ACATCGAAAACTTATCGCCATTTCGGTCTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae R6

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae D39

58.589

97.313

0.57
  ruvB Helicobacter pylori 26695

54.952

93.433

0.513
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507