Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxQ   Type   Regulator
Locus tag   QSU95_RS22305 Genome accession   NZ_CP128205
Coordinates   1451252..1453828 (+) Length   858 a.a.
NCBI ID   WP_286212872.1    Uniprot ID   -
Organism   Vibrio furnissii strain VFBJ05     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 1446252..1458828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSU95_RS22275 (QSU95_22275) - 1446900..1447868 (+) 969 WP_222735261.1 tyrosine-type recombinase/integrase -
  QSU95_RS22280 (QSU95_22280) - 1448030..1448347 (-) 318 WP_004726770.1 DUF496 family protein -
  QSU95_RS22285 (QSU95_22285) - 1448537..1448734 (+) 198 WP_014257418.1 hypothetical protein -
  QSU95_RS22290 (QSU95_22290) - 1448778..1449413 (+) 636 WP_004726766.1 YceH family protein -
  QSU95_RS22295 (QSU95_22295) - 1449424..1449714 (+) 291 WP_232658979.1 GIY-YIG nuclease family protein -
  QSU95_RS22300 (QSU95_22300) luxP 1450134..1451231 (+) 1098 WP_004726763.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QSU95_RS22305 (QSU95_22305) luxQ 1451252..1453828 (+) 2577 WP_286212872.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  QSU95_RS22310 (QSU95_22310) - 1453825..1454505 (-) 681 WP_004726760.1 flagellar brake protein -
  QSU95_RS22315 (QSU95_22315) - 1454630..1455154 (-) 525 WP_004726759.1 hypothetical protein -
  QSU95_RS22320 (QSU95_22320) - 1455306..1455677 (-) 372 WP_143680023.1 NirD/YgiW/YdeI family stress tolerance protein -
  QSU95_RS22325 (QSU95_22325) - 1455843..1457327 (+) 1485 WP_286212877.1 cobyric acid synthase -
  QSU95_RS22330 (QSU95_22330) modA 1457336..1458109 (+) 774 WP_286213698.1 molybdate ABC transporter substrate-binding protein -
  QSU95_RS22335 (QSU95_22335) modB 1458099..1458809 (+) 711 WP_286212879.1 molybdate ABC transporter permease subunit -

Sequence


Protein


Download         Length: 858 a.a.        Molecular weight: 95970.34 Da        Isoelectric Point: 4.9933

>NTDB_id=846798 QSU95_RS22305 WP_286212872.1 1451252..1453828(+) (luxQ) [Vibrio furnissii strain VFBJ05]
MSIRASTVKQKRKIATFISRAIVTVLGALTLTVLFQSYQISSRLISQEVARTSTQTSSLIQNLFNYRLATLQIHQDSSAK
NASLIQALNSDSGAALDQYFLSVDQLELNNTPDIRFITDLKEMVWEDGNSQFYGVPPKELNKIIRKVSISSNWHLIQTPS
VLGTAYLLVRRSPIVDTATGEVIGFLYVSTVLNNNFTLIETIRDSSNSQNLILTVGSEVLASTLNGDESYSTFDVLEDGL
SDALYDKNMVAKTALEVEGVPTYLSIYSVQSNENALSLRNNYYFWMVFALVAMVGVSILTRWWLQRRIESEIDGLMTYTH
KVAERGLDDFFPGSKIYEFDHFGRTLEHTFQRLSDQEKQFEDLFNFALSPTILWTAEGELIRMNPSAHSHFLRNNADDHS
LFSVLKRQLIPQIKLAAQGEILKEVNTEVDGRVILWNLSPIVVENRIESIITQGQDVTSIAEAEKQSRIARKEAEESARV
RADFLAKMSHELRTPLNGILGVSQLLKRTVTEKEQAEQVNVLCSSGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVV
SAIERIYRPLCREKGLTLTLNTNIGEDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQLHLIETEAGAKLEITVLDTG
IGIREQDLALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKSSFGVGTRFTIELPLEIVTAETQTVAHNDG
KSRYELFDGAVNVLLVEDNHTNAFIARAFCKKYGMNVDWVTDGLQAIEKVKHQPYDLILMDNQLPYLDGVDATRIIKHDM
GLAMPVYACTADGMAETQEAFMSAGAEYVIVKPIKEETLHQALVNFKTHAAELAVTER

Nucleotide


Download         Length: 2577 bp        

>NTDB_id=846798 QSU95_RS22305 WP_286212872.1 1451252..1453828(+) (luxQ) [Vibrio furnissii strain VFBJ05]
GTGAGCATCAGGGCTAGTACAGTCAAACAGAAAAGAAAAATAGCAACCTTCATCAGCCGAGCAATTGTCACTGTGCTCGG
CGCGCTCACGTTGACGGTGCTTTTTCAGAGTTATCAAATCAGCAGCCGCTTGATTTCGCAAGAAGTGGCACGCACCTCGA
CCCAAACCTCCAGCCTGATTCAAAACCTGTTTAATTATCGTCTCGCCACGTTGCAAATTCACCAAGACAGCAGTGCGAAA
AATGCCAGTCTTATTCAAGCGTTAAACAGCGACAGCGGTGCTGCGTTGGATCAGTATTTCTTGAGCGTCGATCAGCTCGA
ACTCAACAATACACCAGATATTCGTTTCATCACCGACCTCAAAGAGATGGTATGGGAAGATGGCAATTCGCAGTTTTACG
GCGTTCCCCCCAAAGAGCTCAATAAGATCATTCGCAAAGTGTCGATCAGCAGCAACTGGCATCTGATTCAAACGCCATCG
GTGCTGGGCACGGCGTATTTATTGGTTCGCCGCTCGCCGATTGTGGATACGGCAACGGGTGAAGTGATTGGCTTTTTGTA
TGTCAGTACCGTGCTCAATAACAACTTCACGTTGATTGAAACCATCCGCGACAGCAGTAACTCGCAAAACCTGATTTTAA
CGGTGGGCTCTGAGGTGTTGGCTTCAACACTCAATGGCGATGAATCCTATTCGACCTTTGATGTGCTGGAAGATGGCCTG
AGCGATGCCTTGTATGACAAAAATATGGTGGCCAAAACGGCGCTGGAAGTGGAAGGGGTGCCGACGTATCTCAGCATTTA
TTCCGTGCAGAGCAACGAAAACGCCCTGAGCCTGCGCAACAACTACTATTTCTGGATGGTGTTCGCTTTGGTGGCGATGG
TTGGGGTGTCCATTCTCACGCGCTGGTGGTTGCAGCGTAGGATTGAATCTGAAATCGATGGTTTGATGACCTACACCCAC
AAAGTGGCGGAGCGGGGCTTGGATGACTTCTTCCCCGGCTCGAAAATCTATGAATTCGACCACTTTGGCCGAACGTTGGA
GCACACCTTTCAGCGCTTATCCGATCAAGAGAAACAGTTCGAAGATTTGTTTAATTTTGCGCTGTCACCCACCATTTTAT
GGACGGCTGAGGGCGAATTGATTCGTATGAACCCGTCAGCACATTCGCACTTCCTGCGCAATAACGCCGACGATCATTCG
CTATTTTCAGTGCTGAAACGCCAACTGATTCCACAAATTAAATTGGCGGCGCAAGGGGAAATCCTCAAAGAAGTGAATAC
GGAAGTGGATGGCCGAGTGATCTTGTGGAACTTGTCTCCCATTGTGGTTGAAAACCGCATTGAATCGATTATCACGCAAG
GCCAAGACGTCACTTCTATTGCTGAGGCCGAAAAGCAAAGCCGCATTGCGCGTAAAGAGGCGGAAGAATCGGCGCGCGTT
CGGGCTGATTTTCTGGCGAAAATGAGTCATGAATTGCGCACGCCACTGAATGGCATTTTGGGCGTTTCGCAACTGCTCAA
ACGCACAGTCACGGAAAAAGAGCAGGCCGAACAGGTCAACGTGCTGTGCAGCAGTGGTGAGCATTTATTGGCGGTGCTGA
ATGACATTCTTGATTTCTCTAAGATCGAGCAAGGCAAATTTCGCATCCAGAAAGCGGATTTCCCGTTGGTGGATGTGGTG
TCTGCCATTGAGCGCATCTATCGGCCTTTGTGTCGTGAAAAAGGCTTAACGCTGACTCTCAACACCAATATTGGCGAGGA
TTTGGTGGTGCGCACCGATCAAGTGCGACTCAATCAAATCCTGTTTAATCTGCTCAACAATTCGGTGAAGTTCACCCATG
AGGGCGCCATCAATATTCAGCTTCATCTTATAGAGACTGAAGCGGGCGCGAAACTTGAGATTACCGTTTTAGATACCGGC
ATTGGGATTCGTGAGCAAGATTTAGCACTCATTTTTGAACCGTTTGTGCAGGCGGAATCGACCAACACGCGTGAATATGG
TGGCAGCGGCCTTGGGCTGGCTATTGTACATAGCTTGATTGAAATGCTTGGCGGTTCGATTGAAGTGAAGTCGAGCTTTG
GCGTTGGCACGCGGTTTACCATCGAATTGCCGTTGGAGATTGTGACCGCCGAAACGCAAACCGTCGCACACAACGACGGC
AAGTCACGCTATGAGCTCTTTGACGGGGCGGTGAACGTACTCTTGGTGGAAGACAATCACACCAATGCCTTCATCGCACG
TGCGTTTTGCAAAAAATACGGTATGAATGTGGATTGGGTGACTGATGGATTGCAAGCGATCGAGAAAGTGAAACATCAGC
CCTACGATCTGATCTTAATGGACAACCAACTGCCGTATCTCGATGGTGTGGATGCCACGCGCATCATCAAACATGACATG
GGGCTGGCGATGCCGGTCTACGCGTGTACTGCCGATGGTATGGCGGAAACGCAAGAGGCCTTTATGTCGGCAGGTGCGGA
ATACGTCATTGTGAAACCCATCAAAGAAGAGACCTTGCATCAAGCCTTGGTGAATTTCAAAACGCATGCCGCCGAGCTTG
CGGTGACCGAACGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

63.275

99.65

0.631