Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   K5605_RS08135 Genome accession   NZ_AP024313
Coordinates   1686393..1687079 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N1195     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681393..1692079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5605_RS08115 (N1195TP_15690) rpsT 1682307..1682558 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  K5605_RS08120 (N1195TP_15700) holA 1682603..1683577 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  K5605_RS08125 (N1195TP_15710) comEC 1683634..1685835 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K5605_RS08130 (N1195TP_15720) - 1685840..1686301 (-) 462 WP_000439690.1 ComE operon protein 2 -
  K5605_RS08135 (N1195TP_15730) comEA 1686393..1687079 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  K5605_RS08140 (N1195TP_15740) - 1687119..1687835 (-) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  K5605_RS08145 (N1195TP_15750) rsfS 1687838..1688191 (-) 354 WP_001088020.1 ribosome silencing factor -
  K5605_RS08150 (N1195TP_15760) yqeK 1688192..1688776 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  K5605_RS08155 (N1195TP_15770) nadD 1688766..1689335 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  K5605_RS08160 (N1195TP_15780) yhbY 1689338..1689628 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  K5605_RS08165 (N1195TP_15790) aroE 1689632..1690438 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  K5605_RS08170 (N1195TP_15800) yqeH 1690452..1691552 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=84670 K5605_RS08135 WP_001825349.1 1686393..1687079(-) (comEA) [Staphylococcus aureus strain N1195]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=84670 K5605_RS08135 WP_001825349.1 1686393..1687079(-) (comEA) [Staphylococcus aureus strain N1195]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment