Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQ987_RS10610 Genome accession   NZ_CP128172
Coordinates   2146210..2146776 (+) Length   188 a.a.
NCBI ID   WP_021245823.1    Uniprot ID   -
Organism   Sphingobium baderi strain SC-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2141210..2151776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ987_RS10585 (QQ987_10580) - 2141837..2142193 (+) 357 WP_410487115.1 Rap1a/Tai family immunity protein -
  QQ987_RS10590 (QQ987_10585) - 2142379..2143272 (+) 894 WP_323809506.1 DMT family transporter -
  QQ987_RS10595 (QQ987_10590) - 2143305..2143964 (+) 660 WP_323809507.1 COQ9 family protein -
  QQ987_RS10600 (QQ987_10595) - 2144032..2144289 (+) 258 WP_021245821.1 ferrous iron transport protein A -
  QQ987_RS10605 (QQ987_10600) feoB 2144286..2146148 (+) 1863 WP_323809508.1 ferrous iron transporter B -
  QQ987_RS10610 (QQ987_10605) ssb 2146210..2146776 (+) 567 WP_021245823.1 single-stranded DNA-binding protein Machinery gene
  QQ987_RS10620 (QQ987_10615) - 2147873..2148481 (+) 609 WP_323809509.1 hypothetical protein -
  QQ987_RS10625 (QQ987_10620) - 2148470..2149102 (-) 633 WP_323809510.1 hypothetical protein -
  QQ987_RS10630 (QQ987_10625) - 2149139..2149624 (-) 486 WP_323809511.1 hypothetical protein -
  QQ987_RS21600 - 2149678..2150043 (-) 366 WP_410487088.1 HGGxSTG domain-containing protein -
  QQ987_RS10635 (QQ987_10630) - 2150105..2151388 (-) 1284 WP_323809512.1 AAA family ATPase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19380.96 Da        Isoelectric Point: 5.0178

>NTDB_id=846444 QQ987_RS10610 WP_021245823.1 2146210..2146776(+) (ssb) [Sphingobium baderi strain SC-1]
MAGSVNKVILVGNLGADPEVRSFQNGGKVCNIRIATSESWKDRNSGERKERTEWHNVAIFSEGLAGVAERYLRKGSKIYV
EGQLRTRKWQDQSGNDRYTTEVVLQGPGAVLTMLDGAPGGGGQGGGGGRSQAGGDWSGGSSGFGGGDYDDFGGGGNFGGG
AGRSSQGSGRGSAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=846444 QQ987_RS10610 WP_021245823.1 2146210..2146776(+) (ssb) [Sphingobium baderi strain SC-1]
ATGGCGGGCTCGGTGAACAAGGTCATTCTGGTCGGCAATCTGGGCGCGGACCCGGAAGTCCGCAGCTTCCAGAATGGCGG
CAAAGTGTGCAACATCCGCATCGCCACGTCCGAAAGCTGGAAGGACCGCAATTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTGGCGATCTTTTCGGAAGGGCTGGCAGGCGTGGCCGAACGCTACCTCCGCAAGGGATCGAAGATCTATGTC
GAGGGACAGCTTCGCACCCGCAAATGGCAGGACCAATCGGGCAATGACCGCTACACCACGGAAGTCGTGTTGCAAGGCCC
GGGTGCGGTGCTGACCATGCTGGACGGCGCACCGGGCGGTGGCGGCCAGGGCGGTGGCGGTGGCCGCTCGCAGGCCGGCG
GCGACTGGTCGGGCGGGTCGAGCGGCTTTGGCGGCGGCGACTATGACGATTTCGGTGGCGGCGGAAACTTCGGCGGCGGC
GCGGGGCGCTCGTCGCAGGGCAGCGGGCGCGGCAGCGCGGGCGGGCCGAATTTCGACAATGATCTGGACGATGAAGTGCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.421

100

0.489
  ssb Vibrio cholerae strain A1552

47.059

99.468

0.468
  ssb Neisseria gonorrhoeae MS11

35.468

100

0.383