Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QRE67_RS19480 Genome accession   NZ_CP128153
Coordinates   3900652..3902391 (-) Length   579 a.a.
NCBI ID   WP_286121864.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3895652..3907391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS19445 (QRE67_19435) - 3896388..3896522 (+) 135 WP_286121858.1 hypothetical protein -
  QRE67_RS19450 (QRE67_19440) - 3896709..3896894 (+) 186 WP_286121859.1 hypothetical protein -
  QRE67_RS19455 (QRE67_19445) - 3896890..3897194 (+) 305 Protein_3789 tyrosine-type recombinase/integrase -
  QRE67_RS19460 (QRE67_19450) - 3897509..3897709 (+) 201 WP_286121860.1 hypothetical protein -
  QRE67_RS19465 (QRE67_19455) - 3897770..3897907 (-) 138 WP_286121861.1 hypothetical protein -
  QRE67_RS19470 (QRE67_19460) spo0A 3898151..3898945 (-) 795 WP_286121862.1 sporulation transcription factor Spo0A Regulator
  QRE67_RS19475 (QRE67_19465) spoIVB 3899232..3900533 (-) 1302 WP_286121863.1 SpoIVB peptidase -
  QRE67_RS19480 (QRE67_19470) recN 3900652..3902391 (-) 1740 WP_286121864.1 DNA repair protein RecN Machinery gene
  QRE67_RS19485 (QRE67_19475) argR 3902669..3903118 (-) 450 WP_286121865.1 arginine repressor ArgR -
  QRE67_RS19490 (QRE67_19480) - 3903261..3904100 (-) 840 WP_286121866.1 TlyA family RNA methyltransferase -
  QRE67_RS19495 (QRE67_19485) dxs 3904104..3905996 (-) 1893 WP_286121867.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QRE67_RS19500 (QRE67_19490) - 3906383..3907276 (-) 894 WP_286121868.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65894.03 Da        Isoelectric Point: 4.8262

>NTDB_id=846354 QRE67_RS19480 WP_286121864.1 3900652..3902391(-) (recN) [Bacillus sp. DX3.1]
MLSELSIRNFAIIESLNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTDKAEIEGLFYVEDEKHPCIKK
AEELDIEIEDGMIILKRDISVNGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGNRIVNQL
GKYQDVYGEYEQLKKQLRSLTENEQQMAHRLDLIQFQLEEIRNANLTVDEENELVEERLKISNFERIYKALGDAYRSLNE
DGCGLDHVRNAMGQMESITHLDEAYQENYDTIANSYYVLEEAAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILVYADKIEQEIFTIENKDVHIETTKKKLKELEEVILKEATVLSDMRHELAERLTIAIHQELKELYMEKTKFEVRIA
KREGVVEDPLVEGIPVKLTSAGYDHVEFYISTNPGEPLKQLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
ARELLTQAHRFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=846354 QRE67_RS19480 WP_286121864.1 3900652..3902391(-) (recN) [Bacillus sp. DX3.1]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGTCATTAAATATTTCTTTTCAAAAAGGTTTAACAGTTTT
AAGTGGTGAAACAGGCGCAGGAAAGTCGATTATTATCGATGCGATTAGCTTGCTTGTTGGAGGTCGTGGTTCAGCTGAAT
TTGTACGGTACGGTACAGATAAAGCTGAAATTGAAGGGCTATTTTACGTGGAGGATGAAAAGCATCCATGTATTAAGAAA
GCTGAAGAGCTGGATATTGAGATTGAAGATGGAATGATCATTTTAAAGCGTGACATTTCCGTTAACGGAAAAAGTGTATG
CCGTGTAAATGGAAAGCTTGTTACATTAAGTATATTAAAGGAAATTGGTAAAACGCTTGTAGATATTCATGGACAACATG
AAACACAGGATTTAATGAATGAGGAACGTCATTTGTTTATGCTCGATCATTTCGATGGAAATCGTATTGTCAATCAGTTA
GGAAAATATCAAGATGTATATGGTGAATATGAGCAATTAAAGAAGCAATTGCGATCTTTGACGGAAAATGAACAGCAAAT
GGCACATCGTCTAGATTTAATTCAATTCCAATTAGAAGAAATTCGAAACGCAAATCTGACAGTGGATGAAGAAAATGAAT
TGGTTGAAGAACGTCTTAAAATCTCTAACTTCGAAAGAATCTACAAAGCACTTGGTGATGCATACCGTTCACTAAATGAG
GATGGATGTGGTCTTGATCATGTGCGAAATGCAATGGGGCAAATGGAAAGTATTACGCATTTAGATGAGGCATATCAAGA
GAATTATGATACGATTGCAAACAGCTATTATGTATTGGAAGAAGCTGCATATCAGCTTCGAGAAAAGCTGGATATGATGG
AATATGATCCGAATCGTTTGGATGAAATTGAAACACGTTTAAACGAAATTCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATATTAGTGTATGCAGATAAAATTGAGCAAGAAATTTTTACAATTGAAAATAAAGATGTGCATATTGAAAC
GACGAAAAAGAAATTAAAAGAATTAGAAGAAGTTATTTTAAAGGAAGCAACAGTATTAAGTGATATGCGTCATGAACTTG
CAGAGCGCCTAACCATTGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACAAAATTTGAAGTGAGAATCGCA
AAAAGAGAAGGCGTTGTCGAGGATCCTCTTGTAGAGGGTATTCCAGTGAAACTTACATCAGCTGGATATGATCATGTAGA
ATTCTATATTTCAACGAATCCAGGTGAACCGTTAAAACAACTTTCAAAAGTTGCTTCTGGCGGTGAGTTATCTCGTATTA
TTTTGGCGTTGAAAAGTATTTTTTCTAAGCACCAAGGCGTTGCATCTGTCATTTTTGATGAGGTAGATACAGGTGTGAGT
GGACGAGTTGCACAAGCGATTGCTGAAAAGATTTATCGCGTATCCGTAAATTCACAAGTGCTTTGTATTACGCACTTACC
TCAAGTAGCGTCGATGGCAGATTCACATTTATTTATTCGCAAACAAGTTGCGAACGATCGTACGATTACATCAGTTACTG
TGTTAAGTACAGATGAAAAAGTAACAGAAATTGCTCGTATGATTTCCGGTGTAGAGATCACGGATTTAACGACGGAACAT
GCAAGAGAGTTGCTCACGCAAGCGCATCGTTTTAAACAGACAGCAGAGGCTATCCAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.585

100

0.596