Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QRE67_RS00530 Genome accession   NZ_CP128153
Coordinates   98816..100192 (+) Length   458 a.a.
NCBI ID   WP_286123083.1    Uniprot ID   -
Organism   Bacillus sp. DX3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 93816..105192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE67_RS00510 (QRE67_00510) - 94006..94467 (+) 462 WP_286123079.1 CtsR family transcriptional regulator -
  QRE67_RS00515 (QRE67_00515) - 94641..95189 (+) 549 WP_286123080.1 UvrB/UvrC motif-containing protein -
  QRE67_RS00520 (QRE67_00520) - 95194..96258 (+) 1065 WP_286123081.1 protein arginine kinase -
  QRE67_RS00525 (QRE67_00525) clpC 96281..98716 (+) 2436 WP_286123082.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  QRE67_RS00530 (QRE67_00530) radA 98816..100192 (+) 1377 WP_286123083.1 DNA repair protein RadA Machinery gene
  QRE67_RS00535 (QRE67_00535) disA 100196..101269 (+) 1074 WP_286123084.1 DNA integrity scanning diadenylate cyclase DisA -
  QRE67_RS00540 (QRE67_00540) - 101430..102536 (+) 1107 WP_286123085.1 PIN/TRAM domain-containing protein -
  QRE67_RS00545 (QRE67_00545) ispD 102553..103227 (+) 675 WP_286123086.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QRE67_RS00550 (QRE67_00550) ispF 103351..103827 (+) 477 WP_286123087.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49890.57 Da        Isoelectric Point: 7.3896

>NTDB_id=846328 QRE67_RS00530 WP_286123083.1 98816..100192(+) (radA) [Bacillus sp. DX3.1]
MAKKKTKFICQECGYQSAKYMGKCPGCGQWNKLVEEIEPVVSSRRINYANAIQSEVTKPRRLTEVETKSEARIETKFQEF
NRVLGGGIVDGSLVLIGGDPGIGKSTLLLQISSQLADSSYDVLYISGEESAKQIKIRADRLHVNGNNLFVVSETDLQRIA
TYIDEMNPSFVVIDSIQTIHLPEVTSAPGSVAQVRECTAELMKLAKTKGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYF
EGDRHHTYRILRAVKNRFGSTNEMGIFEMKELGLSEVLNPSEIFLEERPVGVAGSTVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLIMAVLEKRAGLLLQNQDAYLKVAGGIKLDEPAVDLAVALSIASSFRDKPTAPGDAVIGEVGLT
GEVRRVSRIEQRVQEAAKLGFQRVIIPRKNLGGWTIPDGIEVVGVSNIGEALRLILGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=846328 QRE67_RS00530 WP_286123083.1 98816..100192(+) (radA) [Bacillus sp. DX3.1]
ATGGCTAAAAAGAAAACGAAATTTATATGTCAAGAATGTGGGTATCAATCGGCGAAATATATGGGGAAGTGTCCCGGATG
CGGGCAATGGAATAAGCTTGTTGAGGAGATAGAACCAGTTGTATCATCACGTCGTATTAACTATGCAAATGCGATTCAAT
CAGAAGTAACGAAGCCACGTCGTCTTACAGAAGTAGAAACGAAATCAGAAGCACGTATTGAAACGAAATTTCAAGAGTTT
AATCGTGTACTTGGTGGAGGAATTGTAGATGGTTCCCTTGTACTTATTGGAGGAGACCCTGGGATTGGAAAATCAACATT
ATTACTACAAATATCATCGCAACTAGCAGACTCCTCCTATGATGTGTTGTATATATCTGGTGAAGAATCAGCAAAGCAAA
TTAAAATACGCGCAGATCGTCTGCACGTAAATGGAAATAATTTATTTGTTGTTTCGGAAACAGATTTACAGCGAATTGCA
ACATATATAGATGAAATGAACCCTTCATTTGTTGTCATTGATTCCATTCAAACGATTCATTTACCGGAAGTGACTTCGGC
GCCAGGAAGCGTCGCGCAAGTACGTGAATGTACAGCAGAGTTGATGAAACTTGCAAAAACGAAAGGAATTCCTATTTTTA
TCGTGGGGCATGTAACGAAAGAAGGGGCGATTGCTGGACCTCGTATGTTAGAGCATATGGTGGATGCGGTTCTTTATTTT
GAAGGAGATCGTCATCATACATATCGTATTTTACGAGCAGTAAAAAATCGTTTTGGTTCCACAAATGAAATGGGAATTTT
TGAAATGAAGGAATTGGGTCTTTCGGAAGTGTTAAATCCTTCTGAAATATTTCTAGAGGAAAGACCTGTTGGGGTCGCCG
GCTCTACAGTTGTTGCTTCTATGGAAGGAACAAGACCTGTGTTAGTAGAAATACAAGCATTAATCTCTCCTACTAGTTTT
GGAAATCCGCGAAGAATGGCTACAGGAATCGATCATAATCGTGTATCACTTATTATGGCGGTATTAGAAAAAAGAGCGGG
ACTATTATTGCAAAATCAAGACGCCTATCTAAAGGTTGCTGGTGGAATAAAGTTAGATGAACCAGCCGTTGACTTAGCGG
TTGCCTTAAGTATTGCATCTAGCTTTCGAGATAAACCAACTGCGCCGGGAGATGCTGTGATAGGAGAAGTTGGTTTAACA
GGTGAAGTACGGAGGGTATCACGAATTGAACAACGGGTACAAGAAGCGGCTAAATTAGGATTTCAACGAGTTATTATCCC
GCGCAAGAATTTGGGTGGCTGGACAATTCCAGATGGGATTGAAGTGGTCGGTGTGTCCAATATAGGAGAGGCGCTTCGTT
TGATATTAGGAGGCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-222)

Subunit ChlI of Mg-chelatase (ChlI)

(363-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

74.946

100

0.751
  radA Streptococcus mitis NCTC 12261

62.719

99.563

0.624
  radA Streptococcus pneumoniae D39

62.5

99.563

0.622
  radA Streptococcus pneumoniae TIGR4

62.5

99.563

0.622
  radA Streptococcus mitis SK321

62.5

99.563

0.622
  radA Streptococcus pneumoniae R6

62.5

99.563

0.622
  radA Streptococcus pneumoniae Rx1

62.5

99.563

0.622