Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QRY64_RS28725 Genome accession   NZ_CP128152
Coordinates   5027205..5028554 (-) Length   449 a.a.
NCBI ID   WP_128805256.1    Uniprot ID   -
Organism   Bacillus albus strain SXL388     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5022205..5033554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS28690 (QRY64_28655) - 5022241..5022936 (-) 696 WP_286120059.1 hypothetical protein -
  QRY64_RS28695 (QRY64_28660) - 5022923..5023711 (-) 789 WP_128805259.1 hypothetical protein -
  QRY64_RS28700 (QRY64_28665) - 5023743..5024312 (-) 570 WP_286120060.1 hypothetical protein -
  QRY64_RS28705 (QRY64_28670) - 5024430..5024912 (-) 483 WP_088313534.1 hypothetical protein -
  QRY64_RS28710 (QRY64_28675) raiA 5025314..5025856 (-) 543 WP_048528141.1 ribosome-associated translation inhibitor RaiA -
  QRY64_RS28715 (QRY64_28680) cspC 5026177..5026374 (-) 198 WP_001990088.1 cold shock protein CspC -
  QRY64_RS28720 (QRY64_28685) - 5026501..5027205 (-) 705 WP_286120061.1 ComF family protein -
  QRY64_RS28725 (QRY64_28690) comFA 5027205..5028554 (-) 1350 WP_128805256.1 ATP-dependent helicase ComFA Machinery gene
  QRY64_RS28730 (QRY64_28695) - 5028680..5030120 (-) 1441 Protein_5135 NlpC/P60 family protein -
  QRY64_RS28735 (QRY64_28700) - 5030260..5030574 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  QRY64_RS28740 (QRY64_28705) - 5030747..5031589 (-) 843 WP_048528137.1 DegV family protein -
  QRY64_RS28745 (QRY64_28710) - 5031830..5032465 (+) 636 WP_048528136.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51266.82 Da        Isoelectric Point: 9.6635

>NTDB_id=846317 QRY64_RS28725 WP_128805256.1 5027205..5028554(-) (comFA) [Bacillus albus strain SXL388]
MLAGKQLLLEELSSDLRKELSDLKKKGEVACVQGITKNASKYICQRCGNIEQRLFASFLCKRCSKRCTYCRKCITMGRVS
ECTVLVRGIQERKEERELNQLQWKGVLSTGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINIAALYGGSTDREKDAALVVATTHQLLRYYRAFHVMIVDEIDAFPYHADQMLQYAVQQAM
KEKAARIYLTATPDEKWKRNFRKGNQKGIIVSGRYHRHPLPVPLFSWCGNWKKSLQHKKIPRVLLQWLKIYVNKKHPIFL
FVPHVRYIEEISLLLKELDNRIDGVHAEDSMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVMYFHYGKTESMVRAKKHILSMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=846317 QRY64_RS28725 WP_128805256.1 5027205..5028554(-) (comFA) [Bacillus albus strain SXL388]
ATGCTTGCTGGAAAACAGTTGCTATTAGAAGAACTCTCTTCAGATTTACGGAAAGAATTAAGTGACTTGAAAAAGAAGGG
AGAAGTCGCATGTGTACAAGGCATAACAAAGAATGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGAT
TATTTGCATCATTTTTATGTAAAAGGTGCAGTAAAAGATGCACGTATTGCCGGAAGTGCATCACGATGGGGAGAGTTAGT
GAATGTACTGTACTCGTTCGTGGGATTCAGGAAAGAAAGGAAGAAAGAGAGTTAAATCAGTTGCAGTGGAAAGGGGTTTT
GTCTACCGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCCTTCTTTATTTGGGCTGTAT
GCGGTGCTGGAAAAACAGAAATGTTATTTTACGGTATTGCAGAGGCACTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACAGACGTTGTACTGGAACTAGCACCGAGATTACAAGAAGTGTTTCCTAATATAAATATAGCTGCTTTATACGG
AGGGAGTACAGATCGTGAAAAAGATGCAGCGTTAGTCGTTGCAACGACGCATCAATTGTTACGTTATTATAGAGCGTTTC
ATGTCATGATTGTAGATGAAATTGATGCTTTCCCGTATCACGCAGATCAAATGTTACAGTATGCGGTGCAACAAGCGATG
AAAGAGAAAGCGGCGCGTATTTATTTAACAGCAACTCCTGATGAAAAGTGGAAGCGTAATTTCAGAAAGGGGAATCAAAA
AGGTATCATTGTCTCAGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTAGCTGGTGCGGAAATTGGAAGAAAA
GCCTTCAGCATAAAAAAATTCCTCGCGTGTTACTACAATGGTTAAAAATATACGTAAACAAAAAACATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAAATAAGTCTGTTATTGAAAGAATTGGATAATAGAATCGATGGTGTACATGC
AGAAGATTCGATGAGAAAAGAAAAAGTAGCAGCGTTCAGAAAGGGAGAAATTCCGTTATTAGTTACGACAACAATTTTAG
AAAGGGGAGTAACTGTGAAGAATTTACAAGTGGCGGTGCTAGGGGCAGAAGAAGAAATTTTTTCAGAGAGTGCGCTCGTA
CAAATTGCAGGCCGGGCGGGTCGTAGTTTTGAAGAGCCATATGGCGAGGTTATGTATTTTCATTACGGTAAGACAGAGTC
GATGGTACGCGCGAAAAAACACATTTTAAGTATGAACAAAAATGCGAAGGAACAAGGGTTAATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(308-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.357

98.441

0.506
  comFA/cflA Streptococcus mitis SK321

37.844

97.105

0.367
  comFA Latilactobacillus sakei subsp. sakei 23K

40.494

90.2

0.365