Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRY64_RS08850 Genome accession   NZ_CP128152
Coordinates   1256250..1256573 (-) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus albus strain SXL388     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1251250..1261573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS08820 (QRY64_08810) - 1251302..1251529 (+) 228 WP_071758949.1 hypothetical protein -
  QRY64_RS08825 (QRY64_08815) - 1251685..1252971 (+) 1287 WP_048526761.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QRY64_RS08830 (QRY64_08820) - 1253163..1253732 (+) 570 WP_071758970.1 signal peptidase I SipW -
  QRY64_RS08835 (QRY64_08825) - 1253795..1254382 (+) 588 WP_048526763.1 CalY family protein -
  QRY64_RS08840 (QRY64_08830) - 1254517..1255308 (+) 792 WP_071758947.1 DUF4047 domain-containing protein -
  QRY64_RS08845 (QRY64_08835) calY 1255582..1256175 (+) 594 WP_048526765.1 biofilm matrix protein CalY -
  QRY64_RS08850 (QRY64_08840) sinR 1256250..1256573 (-) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  QRY64_RS08855 (QRY64_08845) - 1256653..1256787 (-) 135 WP_048526766.1 anti-repressor SinI family protein -
  QRY64_RS08860 (QRY64_08850) inhA1 1257131..1259518 (+) 2388 WP_071758946.1 M6 family metalloprotease immune inhibitor InhA1 -
  QRY64_RS08865 (QRY64_08855) - 1259672..1261057 (+) 1386 WP_286120247.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=846291 QRY64_RS08850 WP_000578882.1 1256250..1256573(-) (sinR) [Bacillus albus strain SXL388]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=846291 QRY64_RS08850 WP_000578882.1 1256250..1256573(-) (sinR) [Bacillus albus strain SXL388]
ATGATTGGAGAACGTATAAAACGCCTGCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCCGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAGAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692