Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QRY64_RS10175 Genome accession   NZ_CP128152
Coordinates   1498431..1499033 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus albus strain SXL388     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1493431..1504033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS10155 (QRY64_10145) dnaD 1493759..1494466 (+) 708 WP_071757493.1 DNA replication protein DnaD -
  QRY64_RS10160 (QRY64_10150) nth 1494482..1495129 (+) 648 WP_048527079.1 endonuclease III -
  QRY64_RS10165 (QRY64_10155) - 1495133..1495651 (+) 519 WP_048527081.1 YpoC family protein -
  QRY64_RS10170 (QRY64_10160) - 1495675..1498365 (-) 2691 WP_286120252.1 PBP1A family penicillin-binding protein -
  QRY64_RS10175 (QRY64_10165) recU 1498431..1499033 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  QRY64_RS10180 (QRY64_10170) - 1499136..1500161 (+) 1026 WP_071757543.1 DUF2515 domain-containing protein -
  QRY64_RS10185 (QRY64_10175) - 1500319..1500495 (-) 177 WP_052904093.1 hypothetical protein -
  QRY64_RS10190 (QRY64_10180) - 1500581..1500823 (+) 243 WP_001252039.1 hypothetical protein -
  QRY64_RS10195 (QRY64_10185) - 1500839..1501183 (+) 345 WP_048527087.1 YppE family protein -
  QRY64_RS10200 (QRY64_10190) - 1501208..1501399 (-) 192 WP_071757491.1 YppF family protein -
  QRY64_RS10205 (QRY64_10195) - 1501577..1502020 (+) 444 WP_048527091.1 YppG family protein -
  QRY64_RS10210 (QRY64_10200) - 1502176..1502595 (+) 420 WP_128974608.1 CotD family spore coat protein -
  QRY64_RS10215 (QRY64_10205) - 1502652..1503206 (+) 555 WP_048527093.1 DUF1273 domain-containing protein -
  QRY64_RS10220 (QRY64_10210) gpsB 1503304..1503642 (+) 339 WP_000622433.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=846293 QRY64_RS10175 WP_000155592.1 1498431..1499033(-) (recU) [Bacillus albus strain SXL388]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=846293 QRY64_RS10175 WP_000155592.1 1498431..1499033(-) (recU) [Bacillus albus strain SXL388]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGAAGAAAATCAATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCGTGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63