Detailed information    

insolico Bioinformatically predicted

Overview


Name   addA   Type   Machinery gene
Locus tag   QRY64_RS08190 Genome accession   NZ_CP128152
Coordinates   1132908..1136633 (+) Length   1241 a.a.
NCBI ID   WP_270672774.1    Uniprot ID   -
Organism   Bacillus albus strain SXL388     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1127908..1141633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS08175 (QRY64_08165) - 1128066..1128659 (+) 594 WP_048526648.1 TVP38/TMEM64 family protein -
  QRY64_RS08180 (QRY64_08170) lepB 1128716..1129279 (+) 564 WP_048526650.1 signal peptidase I -
  QRY64_RS08185 (QRY64_08175) addB 1129396..1132911 (+) 3516 WP_270672777.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  QRY64_RS08190 (QRY64_08180) addA 1132908..1136633 (+) 3726 WP_270672774.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  QRY64_RS08195 (QRY64_08185) - 1136646..1136933 (+) 288 WP_000255723.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  QRY64_RS08200 (QRY64_08190) - 1137027..1137404 (-) 378 WP_048526657.1 DUF1433 domain-containing protein -
  QRY64_RS08205 (QRY64_08195) - 1137463..1138632 (+) 1170 WP_071758310.1 hypothetical protein -
  QRY64_RS08210 (QRY64_08200) - 1138643..1139023 (+) 381 WP_071758309.1 hypothetical protein -
  QRY64_RS08215 (QRY64_08205) gerPF 1139302..1139517 (-) 216 WP_001141566.1 spore germination protein GerPF -
  QRY64_RS08220 (QRY64_08210) - 1139560..1139946 (-) 387 WP_048526663.1 spore germination protein GerPE -
  QRY64_RS08225 (QRY64_08215) gerPD 1139962..1140156 (-) 195 WP_001102342.1 spore germination protein GerPD -
  QRY64_RS08230 (QRY64_08220) gerPC 1140163..1140777 (-) 615 WP_048526666.1 spore germination protein GerPC -
  QRY64_RS08235 (QRY64_08225) gerPB 1140846..1141052 (-) 207 WP_001012508.1 spore germination protein GerPB -
  QRY64_RS08240 (QRY64_08230) gerPA 1141067..1141288 (-) 222 WP_001111188.1 spore germination protein GerPA -

Sequence


Protein


Download         Length: 1241 a.a.        Molecular weight: 142708.88 Da        Isoelectric Point: 4.8481

>NTDB_id=846284 QRY64_RS08190 WP_270672774.1 1132908..1136633(+) (addA) [Bacillus albus strain SXL388]
MIENWPKKPEGSQWTDDQWKAVVANGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRI
GEALEKVLIDEPGSQHIRKQLSLLNKASISTIHSFCLQVIRGYYYMLDVDPRFRIANQTENELLKEEVLDDILEEEYGIE
DNTIFFELVDRYTSDRSDDDLQRMILALHTESRAHPNPEKWLDKLVEAYDVEGKTIEDLVYASYLLEDVRFQLETAEQHI
RKATELAMLPDGPAPRVETLQADLALLGTLSSAARESWTSVYEAMQNVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEV
KKLQEELFSRKPESFLRDFQDMHPVLEKLIQLVKVFTERFQAMKRDKGMVDFTDLEHFCLQILSEHSENGEMNPSAVALQ
YRNKFAEVLVDEYQDTNFVQESIIKFVTKDSESEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLGGGMKIDLAK
NFRSRHEVLAGTNFIFKQIMGEEVGEIDYDADAELKLGATYPEGEDVAAELLCIQQTEEEVPDGEEGAEVEKAQLEARLM
AQRIKAMVDSGYEVYDRKTDSMRPVQYRDFVILLRSMPWAPQIMEELKLQGIPVYADLATGYFEATEVNIMMNVFRVIDN
PMQDIPLAAVLRSPIVGLNDEELATLRAHGKKGSFYEVMSAFLKGAPLEEEKELHDKLEWFYNLLQGWREFARQQSLSDL
IWKVYGETGYYDFVGGLPAGKQRQANLRVLYDRARQYEVTSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI
HKSKGLEFPVVFVAGLGRRFNTQDLMKRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKMELIAEEMRVLYVALTR
AKEKLILIGTVKDANKEMEKWLDAREHSEWLLPDHIRAGASCYLDWIAPSLYRHRDSEMLLELGQGSIPAEIYGYDTSWK
VEVVDGSTLLAPEPAQEEKQELLEALREKKAVPLQSERKDEVYDRLMWKYGYEEATSHRAKQSVTEIKRNYQSEEGSDNA
FIKKLRAPIQTRPRFMEKKGLTYAERGTAVHAVMQHVDLKKPITEEVIREQINGMVNKELLTFEQAEEIAIEKVISFFDS
DLGKRVLAAKSVEREVPFTMMLAAEEAYQDWQGKSGESILVQGVIDCMIEEEDGITLIDFKTDTIEGKFPGGFDQAKPIL
EDRYKVQLSLYAKALEKSLQHPVKEKCLYFFDGNHVVNIEE

Nucleotide


Download         Length: 3726 bp        

>NTDB_id=846284 QRY64_RS08190 WP_270672774.1 1132908..1136633(+) (addA) [Bacillus albus strain SXL388]
ATGATAGAAAATTGGCCTAAAAAACCAGAAGGTAGTCAGTGGACAGATGACCAGTGGAAAGCCGTTGTAGCGAACGGACG
TGATATTTTAGTCGCGGCAGCAGCTGGTTCAGGGAAAACAGCAGTATTAGTTGAACGTATTATTAAAAAGATTATAAATG
AAGAAAACCCAGTCGATGTCGACCGCCTGCTCGTTGTAACATTTACGAATGCAGCGGCGCAAGAGATGAAAAACAGAATT
GGGGAAGCGTTAGAAAAAGTATTAATTGATGAACCAGGCTCTCAGCACATTAGAAAGCAGCTGAGCCTATTAAATAAAGC
TTCTATTTCGACGATCCATTCCTTTTGTTTACAAGTAATTAGAGGATACTATTACATGCTTGATGTTGATCCTCGTTTCC
GCATTGCGAATCAAACGGAAAATGAATTATTAAAAGAAGAAGTGCTAGATGACATATTAGAAGAAGAGTATGGGATTGAA
GATAATACGATATTCTTTGAACTCGTTGATCGTTATACGAGTGATCGTAGCGATGATGACTTACAGCGTATGATTTTAGC
ACTTCATACAGAATCAAGAGCGCATCCAAATCCGGAAAAGTGGCTCGATAAATTAGTAGAAGCATATGACGTGGAAGGAA
AGACAATTGAAGATTTAGTGTATGCTTCTTATTTATTAGAAGATGTGAGATTCCAGCTTGAAACAGCGGAACAGCATATT
CGGAAAGCGACGGAACTCGCAATGCTTCCTGACGGTCCAGCGCCTCGCGTTGAAACACTGCAAGCAGATTTAGCTTTACT
TGGAACGTTATCATCAGCCGCTCGTGAATCGTGGACAAGCGTGTATGAAGCGATGCAAAACGTATCGTGGCAAACGTTAA
AGCGTATTAAGAAAAGTGATTACAATGAAGATATTGTAAAACAAGTAGACTCTCTTCGTAATAAAGCGAAAGATGAAGTG
AAGAAATTACAAGAAGAGTTATTTAGCCGCAAACCTGAAAGTTTCTTACGAGATTTTCAAGATATGCACCCAGTATTAGA
AAAGCTTATTCAACTTGTAAAAGTATTTACAGAGCGTTTCCAAGCGATGAAACGAGATAAAGGAATGGTCGATTTCACAG
ATTTAGAGCATTTCTGTTTACAAATTTTAAGTGAACATAGTGAAAACGGTGAAATGAATCCGTCAGCAGTAGCGCTTCAA
TATCGTAATAAATTTGCTGAAGTACTAGTCGATGAATATCAAGATACGAACTTCGTACAGGAATCTATTATTAAATTCGT
AACGAAAGATTCTGAGAGTGAAGGAAACTTGTTCATGGTAGGTGACGTAAAACAGTCAATTTATCGTTTCCGACTAGCAG
AACCAGGTTTATTCCTAGGAAAGTATAAACGCTTTACACAAGAAGGATTGGGCGGCGGAATGAAGATAGACTTAGCGAAA
AACTTCCGTAGTCGTCATGAAGTGCTAGCAGGTACGAACTTTATCTTCAAACAAATTATGGGTGAAGAAGTCGGAGAAAT
CGACTACGATGCAGACGCTGAATTAAAGTTAGGTGCTACCTATCCAGAAGGTGAAGATGTAGCGGCTGAACTACTATGTA
TTCAGCAAACGGAAGAAGAAGTGCCAGACGGTGAAGAAGGTGCCGAAGTAGAAAAAGCACAGCTTGAAGCTCGACTTATG
GCGCAGCGTATTAAAGCGATGGTTGATTCAGGTTATGAAGTGTATGACCGTAAAACGGATAGTATGCGCCCTGTACAATA
CCGTGACTTCGTTATTTTGCTTCGCTCTATGCCGTGGGCGCCGCAAATTATGGAAGAGTTAAAGTTGCAAGGAATTCCAG
TATACGCTGATCTTGCGACTGGTTACTTTGAAGCGACAGAAGTAAATATAATGATGAACGTATTCCGCGTGATCGATAAT
CCGATGCAAGATATTCCGCTTGCAGCAGTGCTTCGTTCACCAATCGTTGGATTAAATGATGAAGAACTTGCAACGCTTCG
TGCCCACGGAAAGAAAGGTTCGTTTTATGAAGTGATGAGCGCATTCTTAAAAGGAGCACCGCTTGAAGAAGAAAAAGAAC
TACATGATAAATTAGAGTGGTTCTATAACTTACTACAAGGATGGCGTGAATTCGCACGTCAACAGTCTCTTTCTGATTTA
ATTTGGAAAGTGTACGGTGAGACAGGTTATTACGACTTTGTCGGTGGTTTACCAGCCGGAAAGCAAAGACAGGCAAACTT
GCGTGTATTATATGACCGTGCAAGACAATACGAAGTAACATCGTTTAGAGGACTATTCCGCTTCTTACGTTTTATTGAAC
GTATTTTAGAACGCGGTGACGATATGGGTACGGCGAGAGCTTTAGGTGAACAAGAAGACGTCGTTCGCATTATGACGATT
CATAAAAGTAAAGGGCTTGAGTTCCCAGTCGTATTCGTAGCGGGGCTTGGTCGCCGTTTTAACACACAAGATTTAATGAA
ACGTTTCTTACTGCATAAAGACTTCGGTTTCGGTTCACAATTTATCGATCCTCGTAAACGTATTAAATATACGACATTAT
CGCAACTAGCAATTAAGCGTAAAATGAAAATGGAATTAATCGCGGAAGAAATGCGCGTATTATACGTAGCGTTAACGCGT
GCAAAAGAAAAGTTAATTTTAATTGGAACAGTGAAGGATGCAAATAAGGAAATGGAAAAATGGCTTGATGCGAGAGAGCA
TAGTGAATGGTTATTACCAGACCATATACGTGCCGGAGCGTCTTGTTATTTAGACTGGATAGCACCTTCATTATATAGAC
ATCGTGATAGTGAAATGCTTCTTGAATTAGGACAAGGTAGTATTCCGGCTGAAATTTATGGATACGACACTAGCTGGAAA
GTAGAAGTTGTTGACGGTAGCACGTTACTTGCGCCAGAACCAGCTCAAGAAGAGAAACAAGAATTACTAGAAGCACTTCG
TGAGAAAAAAGCTGTTCCCCTGCAAAGTGAACGAAAAGATGAAGTGTACGACAGATTAATGTGGAAGTACGGATATGAGG
AAGCAACATCTCATCGTGCGAAACAGTCTGTTACAGAAATAAAGAGAAATTATCAATCTGAAGAAGGTAGCGATAACGCC
TTTATTAAAAAACTGCGTGCGCCAATTCAAACACGCCCTCGTTTTATGGAGAAAAAAGGATTAACGTACGCTGAAAGAGG
TACGGCAGTTCACGCTGTTATGCAGCATGTTGATTTGAAGAAGCCAATTACAGAAGAAGTGATTCGGGAACAAATTAATG
GCATGGTCAATAAAGAGCTATTAACATTCGAACAAGCAGAAGAAATAGCAATCGAAAAAGTCATTTCATTCTTTGACAGT
GATCTAGGTAAAAGAGTATTAGCGGCGAAAAGCGTTGAGCGTGAAGTACCATTTACGATGATGCTTGCAGCAGAAGAAGC
ATATCAAGATTGGCAAGGAAAGAGCGGGGAATCAATTCTTGTTCAAGGGGTTATTGACTGTATGATTGAAGAAGAAGACG
GTATTACGTTAATCGATTTTAAAACGGATACGATTGAAGGGAAGTTCCCAGGCGGATTTGATCAAGCGAAACCAATTTTA
GAAGATCGATATAAAGTGCAACTTTCTTTATATGCAAAGGCACTTGAAAAAAGCTTACAACATCCTGTGAAAGAGAAATG
TTTATATTTCTTTGATGGGAATCACGTTGTAAATATTGAAGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

53.666

100

0.537