Detailed information    

insolico Bioinformatically predicted

Overview

Name   addB   Type   Machinery gene
Locus tag   QRY64_RS08185 Genome accession   NZ_CP128152
Coordinates   1129396..1132911 (+) Length   1171 a.a.
NCBI ID   WP_270672777.1    Uniprot ID   -
Organism   Bacillus albus strain SXL388     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1124396..1137911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS08150 (QRY64_08140) cspA 1125267..1125470 (+) 204 WP_000301518.1 RNA chaperone/antiterminator CspA -
  QRY64_RS08155 (QRY64_08145) - 1125572..1125846 (+) 275 Protein_1049 hypothetical protein -
  QRY64_RS08160 (QRY64_08150) - 1125872..1126057 (-) 186 WP_071758314.1 hypothetical protein -
  QRY64_RS08165 (QRY64_08155) - 1126342..1126923 (+) 582 WP_048526644.1 competence protein ComK -
  QRY64_RS08170 (QRY64_08160) - 1127148..1127744 (+) 597 WP_071758313.1 DUF4306 domain-containing protein -
  QRY64_RS08175 (QRY64_08165) - 1128066..1128659 (+) 594 WP_048526648.1 TVP38/TMEM64 family protein -
  QRY64_RS08180 (QRY64_08170) lepB 1128716..1129279 (+) 564 WP_048526650.1 signal peptidase I -
  QRY64_RS08185 (QRY64_08175) addB 1129396..1132911 (+) 3516 WP_270672777.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  QRY64_RS08190 (QRY64_08180) addA 1132908..1136633 (+) 3726 WP_270672774.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  QRY64_RS08195 (QRY64_08185) - 1136646..1136933 (+) 288 WP_000255723.1 RNA polymerase alpha subunit C-terminal domain-containing protein -
  QRY64_RS08200 (QRY64_08190) - 1137027..1137404 (-) 378 WP_048526657.1 DUF1433 domain-containing protein -

Sequence

Protein


Download         Length: 1171 a.a.        Molecular weight: 134360.44 Da        Isoelectric Point: 5.1436

>NTDB_id=846283 QRY64_RS08185 WP_270672777.1 1129396..1132911(+) (addB) [Bacillus albus strain SXL388]
MSLRFVIGRAGSGKSTICLHEVQEELKQRPRGETILYLVPEQMTFQTQQALISSEDVRGSIRAQVFSFSRLAWKVLQEVG
GASRLHIDEAGVHMLLRKIVESRKDGLSVFQKAAEQNGFFEHLGSMIAEFKRYNVTPSNVYEMWQQLDAHSSSAEQKLLA
NKVYDLQLLYDDFERALIGKYLDSEDYLQLLVEKLPQSEYVNGAEIYIDGFHSFSPQELEIVRQLMICGARVTITLTLDE
KTLAQPVNELDLFYETTLTYEKIKQVAREEKIEIEKTIPLMEQPRFHSQSLAHLETHYEARPNEKFHGEASVTISTAANL
RAEVEGVAREIRRLVADEDYRYRDIAVLLRNGESYYDVMRTLFTDYNIPHFIDEKRPMSHHPLVECIRSALEIISGNWRY
DAVFRCVKTELLYPLDVRKETMREEMDEFENYCLAYGVQGKRWTSEDPWMYRRYRSLDDTDGMITDSEREMEEKINRLRD
VVRTPVIRMQKRLKRAGTVMQMCEAVYLFLEELDVPKKLEALRIRAEESGDFLFATDHEQVWEEVMSLLDTFVEMLGEEK
MSLSMFTDVMSTGLEALQFANIPPSLDQVLIANIDRSRLSNVKATFVIGVNEGVIPAAPMDEGMLSDEERDVLSAAGIEL
APTTRQTLLEEQFVMYQMVTRATEKLYISCPLADEEGKTLLASSFIKKIKRMFPDVKDTFITNDVNDLSRSEQISYVATP
EVTLSYVMQQLQTWKRYGFEGNLDFWWDVYNFYVTSDEWKQKSSRVLSSLFYRNRAQKLSTVVSRDLYGDKIKGSVSRME
LFNRCAYAHFAQHGLSLRERDIFKLDAPDIGELFHAALKRIADRLLRENRTWADLSIKECEHLSVLVIEEIAPLLQRQIL
LSSNRHFYLKQKLQQIIFRTSIILREHAKSSGFVPVDLEVPFGMGGTGSLPPMEFSLPNGVKMEVVGRIDRVDKAEDENG
TYLRIIDYKSSSKALDLTEVYYGLALQMLTYLDVVTSNAHTWMKKGGTASPAGVLYFHIHNPIVEMKGDASEAEIEKEIL
KKFKMKGLVLGDADVVRLMDNKLSTGSSDIISAGLKKDGSFSARSSIASEQEFNVLQKYVHHTFENIGKDITEGVIDIAP
YKKGNKAACTFCNFKSVCQFDESLEDNQFRTLKDMKDCEAMEKIREEVGGE

Nucleotide


Download         Length: 3516 bp        

>NTDB_id=846283 QRY64_RS08185 WP_270672777.1 1129396..1132911(+) (addB) [Bacillus albus strain SXL388]
ATGTCACTTCGATTTGTGATTGGTAGAGCGGGAAGTGGGAAAAGTACAATTTGTTTACACGAAGTGCAAGAAGAGTTAAA
GCAGCGTCCAAGAGGGGAAACAATATTATATCTTGTGCCAGAACAGATGACATTCCAAACGCAGCAGGCATTAATTAGTA
GTGAGGATGTAAGAGGTTCTATTCGGGCACAAGTTTTTAGTTTTTCACGATTAGCGTGGAAGGTGCTGCAAGAAGTTGGC
GGAGCGAGTCGTCTTCACATTGATGAAGCAGGCGTACATATGTTACTTCGTAAAATTGTAGAATCTCGTAAAGATGGATT
ATCGGTGTTCCAAAAAGCAGCGGAGCAAAACGGTTTTTTTGAACATCTTGGTAGTATGATTGCGGAGTTTAAACGTTACA
ATGTGACGCCATCTAACGTATATGAAATGTGGCAACAATTAGATGCGCATAGTAGCAGTGCCGAGCAAAAGCTATTAGCG
AATAAAGTGTATGATTTACAACTACTATATGATGATTTTGAGCGTGCTTTAATCGGAAAATATTTAGATTCAGAAGATTA
CTTGCAATTGCTAGTCGAAAAGCTTCCGCAGTCTGAATATGTAAATGGGGCTGAAATTTATATAGATGGATTTCATTCAT
TCTCACCGCAAGAGCTAGAAATTGTGAGACAGCTTATGATTTGCGGAGCGAGAGTGACAATCACGTTAACACTAGATGAA
AAAACGTTAGCACAGCCAGTAAATGAACTAGATTTATTTTATGAAACGACGTTAACGTATGAAAAAATAAAACAAGTAGC
ACGTGAAGAGAAGATAGAAATTGAAAAAACGATTCCGCTTATGGAACAACCGCGTTTTCATTCGCAATCATTAGCGCATT
TAGAAACGCATTACGAAGCTCGTCCAAATGAAAAGTTTCACGGAGAAGCGAGTGTAACGATTAGTACAGCAGCGAATTTA
CGAGCTGAAGTAGAAGGCGTTGCGCGTGAAATTCGTAGACTTGTGGCAGATGAAGACTATCGTTACCGAGATATCGCGGT
ACTTCTTCGTAACGGGGAAAGTTATTATGATGTAATGCGAACGCTATTTACAGATTATAATATCCCGCACTTCATTGATG
AAAAGCGCCCGATGTCACATCATCCGCTAGTAGAATGCATTCGTTCTGCACTCGAGATTATTAGCGGGAATTGGCGTTAT
GATGCAGTGTTTCGTTGCGTGAAAACAGAGCTTTTATATCCATTAGACGTAAGAAAAGAAACGATGCGCGAAGAGATGGA
TGAGTTTGAAAACTACTGTTTAGCTTATGGTGTACAAGGGAAGAGATGGACTTCTGAGGATCCGTGGATGTATCGCCGCT
ATCGTTCTCTTGACGATACGGACGGGATGATTACAGACAGTGAACGTGAAATGGAAGAGAAAATAAATCGATTGCGTGAC
GTTGTAAGAACGCCTGTTATTCGTATGCAAAAAAGACTGAAGCGTGCGGGAACAGTTATGCAAATGTGCGAAGCTGTTTA
CTTATTTTTAGAAGAGCTTGACGTTCCGAAAAAGCTAGAAGCATTACGTATTCGTGCAGAAGAGAGCGGAGATTTCTTAT
TCGCGACAGATCACGAGCAAGTATGGGAAGAAGTAATGAGTCTTCTTGATACGTTCGTAGAGATGCTTGGCGAAGAGAAA
ATGTCACTTTCTATGTTCACAGACGTTATGTCGACAGGTCTTGAGGCGCTTCAATTCGCCAACATTCCGCCGTCATTAGA
CCAAGTGTTAATTGCGAATATTGATCGTTCAAGATTATCAAATGTGAAAGCAACATTTGTCATTGGCGTAAATGAAGGAG
TTATTCCAGCAGCACCGATGGATGAAGGTATGCTTTCTGATGAGGAAAGAGACGTTCTTAGTGCTGCAGGTATCGAATTA
GCACCAACGACGAGACAAACTTTATTAGAAGAACAGTTCGTTATGTACCAAATGGTAACGAGAGCAACTGAGAAATTATA
CATTTCTTGTCCGCTTGCAGATGAGGAAGGAAAGACGTTACTTGCTTCTAGCTTTATTAAGAAAATAAAAAGAATGTTCC
CTGATGTGAAAGATACATTTATTACGAATGACGTAAATGATTTATCCCGTTCGGAACAAATTTCATACGTAGCAACGCCA
GAAGTAACGTTATCTTACGTTATGCAGCAACTTCAAACGTGGAAGCGATACGGATTTGAAGGGAATTTAGACTTTTGGTG
GGACGTATATAACTTCTACGTTACTTCAGATGAATGGAAGCAAAAAAGTAGCCGCGTATTATCAAGCTTATTCTACCGAA
ATCGTGCGCAAAAGCTAAGTACAGTTGTAAGTAGAGATTTATACGGAGATAAAATAAAAGGAAGCGTCTCTCGTATGGAA
CTATTTAACCGTTGCGCATATGCTCATTTCGCGCAGCACGGTTTATCGTTAAGAGAGCGTGATATTTTCAAACTGGATGC
GCCAGATATCGGCGAATTATTCCATGCAGCGCTGAAGAGAATTGCAGACAGGCTATTACGTGAAAATCGTACTTGGGCAG
ACTTATCAATAAAAGAATGCGAGCATCTTTCTGTTTTAGTAATAGAAGAGATTGCACCGTTATTACAAAGACAAATTTTA
TTAAGTTCAAACCGCCATTTCTATTTAAAACAAAAATTGCAGCAAATCATTTTCCGTACGTCAATCATTCTACGTGAACA
TGCGAAATCAAGTGGTTTCGTACCAGTAGATTTAGAAGTACCGTTCGGTATGGGCGGTACAGGATCGCTTCCGCCGATGG
AATTCTCATTACCAAATGGTGTGAAGATGGAAGTAGTTGGCCGTATTGACCGTGTTGATAAGGCAGAAGATGAAAACGGG
ACATACCTCCGTATTATTGATTATAAATCGAGCTCAAAAGCGTTAGATTTAACGGAAGTGTACTACGGATTAGCACTTCA
AATGTTAACGTATTTAGATGTTGTTACTTCAAATGCACATACGTGGATGAAAAAAGGCGGCACGGCTTCACCGGCTGGTG
TACTGTACTTCCATATTCATAACCCAATCGTTGAGATGAAAGGTGACGCATCTGAAGCGGAAATTGAGAAAGAAATTTTA
AAGAAATTTAAAATGAAAGGACTCGTGCTAGGAGATGCTGACGTTGTTCGTTTAATGGATAACAAACTTTCAACAGGAAG
CTCTGATATTATTTCTGCTGGTCTGAAAAAAGACGGTAGCTTTAGTGCGCGTTCAAGCATTGCAAGTGAACAAGAGTTTA
ACGTACTGCAAAAATATGTACACCATACGTTTGAAAATATCGGAAAAGATATTACAGAAGGCGTGATCGATATTGCCCCT
TATAAAAAAGGGAATAAAGCGGCGTGTACGTTCTGTAACTTCAAATCTGTTTGTCAGTTCGATGAATCACTTGAAGATAA
CCAATTCCGTACGCTAAAAGATATGAAAGATTGCGAAGCGATGGAGAAAATTAGAGAGGAGGTTGGCGGAGAATGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(303-669)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(795-1139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addB Bacillus subtilis subsp. subtilis str. 168

49.063

100

0.492