Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpC   Type   Regulator
Locus tag   QRY64_RS08355 Genome accession   NZ_CP128152
Coordinates   1161314..1163914 (+) Length   866 a.a.
NCBI ID   WP_270672765.1    Uniprot ID   -
Organism   Bacillus albus strain SXL388     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context


Location: 1156314..1168914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRY64_RS08320 (QRY64_08310) prsA 1157076..1157933 (-) 858 WP_048526689.1 peptidylprolyl isomerase PrsA -
  QRY64_RS08325 (QRY64_08315) - 1158063..1158194 (-) 132 WP_001120847.1 DUF3941 domain-containing protein -
  QRY64_RS08330 (QRY64_08320) - 1158295..1159152 (+) 858 WP_071758300.1 YitT family protein -
  QRY64_RS08335 (QRY64_08325) - 1159178..1159375 (-) 198 WP_000527393.1 DUF3813 domain-containing protein -
  QRY64_RS08340 (QRY64_08330) - 1159376..1159516 (-) 141 WP_000516816.1 hypothetical protein -
  QRY64_RS08345 (QRY64_08335) - 1159622..1160431 (-) 810 WP_270672769.1 Cof-type HAD-IIB family hydrolase -
  QRY64_RS08350 (QRY64_08340) - 1160924..1161103 (+) 180 WP_000531421.1 YjzC family protein -
  QRY64_RS08355 (QRY64_08345) clpC 1161314..1163914 (+) 2601 WP_270672765.1 ATP-dependent chaperone ClpB Regulator
  QRY64_RS08360 (QRY64_08350) - 1163948..1164130 (-) 183 WP_001211116.1 YjzD family protein -
  QRY64_RS08365 (QRY64_08355) - 1164287..1165021 (+) 735 WP_048526692.1 hydrolase -
  QRY64_RS08370 (QRY64_08360) - 1165051..1165923 (+) 873 WP_052904089.1 NAD(P)-dependent oxidoreductase -
  QRY64_RS08375 (QRY64_08365) comZ 1165977..1166153 (+) 177 WP_048527481.1 ComZ family protein Regulator
  QRY64_RS08380 (QRY64_08370) fabH 1166406..1167338 (+) 933 WP_001100534.1 beta-ketoacyl-ACP synthase III -
  QRY64_RS08385 (QRY64_08375) fabF 1167370..1168608 (+) 1239 WP_270672759.1 beta-ketoacyl-ACP synthase II -

Sequence


Protein


Download         Length: 866 a.a.        Molecular weight: 97445.55 Da        Isoelectric Point: 5.2391

>NTDB_id=846285 QRY64_RS08355 WP_270672765.1 1161314..1163914(+) (clpC) [Bacillus albus strain SXL388]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLFTLLEEQDGLAVRIFQKMNVDIEALKQGAESLIKKKPSVTGSGAE
AGKLYITGALQQLLVRAGKEAEKLQDDYISVEHVLLAFSEEKGNINQLFTRFHITKDNLLQSLMTVRGNQRVTSQNPEAT
YEALEKYGRDLVAEVRAGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKEKDFGSQERLKTLQRELSDLKEVASGMRAKWEKEKEDIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAIEKELKEAEEMGAHNKQENRLLREEVSEEEIADIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVSDAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQMIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSAHLLDGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHIT
VELTDAAKEFVVEAGFDPMYGARPLKRYVQRQVETKLARELIAGTIMDSSHVVVDVANNELVVRVK

Nucleotide


Download         Length: 2601 bp        

>NTDB_id=846285 QRY64_RS08355 WP_270672765.1 1161314..1163914(+) (clpC) [Bacillus albus strain SXL388]
ATGGACTTAAATCAAATGACAACGAAAACACAAGAGGCGATTATGAGTGCCCAATCTTTAGCGGTGTCTCATCATCATCA
AGAAGTAGATACTGTTCATCTCTTGTTTACATTATTAGAAGAGCAAGATGGGTTAGCAGTACGTATTTTTCAAAAAATGA
ATGTCGATATAGAAGCGTTAAAACAAGGTGCTGAAAGTTTAATTAAGAAAAAGCCCTCTGTAACGGGAAGCGGTGCAGAA
GCAGGTAAATTATATATAACAGGTGCTCTGCAACAACTACTTGTAAGAGCGGGAAAAGAAGCAGAAAAATTGCAAGATGA
CTACATTTCAGTCGAGCATGTATTGCTTGCTTTTTCTGAAGAAAAAGGCAATATCAATCAATTATTCACAAGATTTCATA
TTACGAAAGATAACTTATTACAGTCTTTAATGACAGTTCGGGGGAATCAAAGAGTGACTAGTCAAAATCCAGAAGCAACT
TATGAAGCGTTAGAAAAATATGGCCGTGATTTAGTGGCGGAAGTAAGAGCGGGGAAAATTGACCCTGTTATCGGCCGCGA
TAGTGAAATTCGCCGTGTAATCCGCATTCTTTCACGTAAAACGAAAAACAACCCGGTTTTAATTGGTGAGCCAGGTGTTG
GTAAAACAGCGATCGTTGAAGGATTAGCACAGCGTATTGTGAAGAAGGATGTGCCTGAAGGATTAAAAGATAGAACAATC
TTTGCATTAGATATGAGTGCGCTCGTAGCTGGAGCGAAATTCCGTGGTGAATTTGAAGAGCGTCTGCAAGCTGTATTAAA
TGAAATTAAAAAGAGTGAAGGCCGCATTTTATTATTCATTGATGAACTTCATACAATCGTCGGCGCTGGTAAAACAGAAG
GTGCGATGGACGCAGGAAATATGTTAAAACCGATGCTTGCTCGCGGTGAACTGCATTGTATCGGAGCGACGACGCTCGAT
GAATATCGTAAATATATTGAGAAAGATCCAGCGTTAGAAAGACGTTTCCAACAAGTATTAGCAGAAGAACCAACTGTTGA
AGATACAATTTCCATTTTACGTGGTTTAAAAGAGCGTTTTGAAATTTATCACGGTGTAAATATTCATGACCGCGCGATTG
TAGCAGCATCTGTTTTATCAGATCGATATATTTCGGATCGTTTCTTACCAGATAAAGCAATTGATCTTGTTGACGAAGCG
TGTGCAACGATTCGAACAGAGATTGATTCTATGCCAACAGAATTAGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCAGCTCTTGGAAAAGAGAAGGACTTCGGTAGCCAAGAACGTCTAAAAACGTTGCAACGTGAATTATCGGATT
TAAAAGAAGTTGCAAGTGGTATGAGAGCGAAATGGGAGAAAGAAAAAGAAGATATTCACAAAGTTCGTGACTTACGTGAA
CATTTAGAGCGTCTGCGCCGTGAATTAGAAGAAGCAGAAGGGAATTACGATTTAAATAAAGCAGCGGAACTTCGCCACGG
AAAAATTCCTGCAATTGAAAAAGAGTTAAAAGAAGCAGAAGAAATGGGCGCACATAATAAACAAGAAAATCGTTTATTAC
GTGAGGAAGTAAGTGAAGAAGAAATTGCTGATATTGTTTCACGCTGGACTGGTATTCCTGTTGCAAAACTCGTTGAAGGT
GAACGTGAGAAATTACTACGCTTAGAGCAAATTTTATCAGAACGTGTCATCGGACAAGAGGAAGCGGTAAGCTTAGTATC
AGACGCAGTTCTTCGTGCGCGCGCTGGTATTAAAGACCCGAACCGTCCGATTGGTTCCTTCATTTTCTTAGGACCGACTG
GTGTTGGTAAAACAGAACTTGCAAAAACTTTAGCGCAGTCTCTATTCGATAGTGAAGAGCAAATGATCCGTATCGATATG
TCTGAGTATATGGAGAAACACGCTGTGTCACGCTTAATTGGTGCGCCTCCTGGATATGTTGGATATGAAGAGGGCGGTCA
ATTAACAGAAGCAGTAAGACGTAAACCGTATTCCGTTATTTTATTAGACGAAATCGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGACGGACGCATTACAGATTCGCAAGGACGTACAGTAGACTTTAAAAACACAGTTATT
ATTATGACTTCAAATATTGGATCTGCTCATTTATTAGATGGATTAGAAGAAGATGGCTCCATTAAAGAAGAATCAAGAGA
ACTTGTGATGGGACAATTAAGAGGACATTTCCGACCAGAGTTTTTAAACCGTGTCGACGAAATTATTTTATTCAAACCTC
TTACAACGAATGAAATTAAAGGTATTGTTGATAAAATTGTAAAAGAATTACAAGGTCGTTTAGCTGACCGTCATATTACA
GTAGAATTAACAGACGCAGCGAAAGAATTTGTTGTAGAAGCTGGCTTTGATCCGATGTACGGAGCTCGTCCATTAAAACG
ATATGTACAGCGTCAAGTTGAGACGAAATTAGCGAGAGAATTAATTGCAGGTACGATTATGGACAGTAGTCATGTAGTAG
TTGATGTAGCAAATAACGAATTAGTCGTTCGTGTGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

47.434

100

0.48

  clpC Lactococcus lactis subsp. cremoris KW2

46.806

83.141

0.389