Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QRE64_RS21500 Genome accession   NZ_CP128137
Coordinates   4177074..4177820 (-) Length   248 a.a.
NCBI ID   WP_002088669.1    Uniprot ID   R8MN78
Organism   Bacillus mycoides strain SIN3.1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4172074..4182820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE64_RS21480 (QRE64_21425) dnaG 4172801..4174603 (-) 1803 WP_002067179.1 DNA primase -
  QRE64_RS21485 (QRE64_21430) - 4174685..4174828 (-) 144 WP_220089774.1 hypothetical protein -
  QRE64_RS21490 (QRE64_21435) - 4175493..4176305 (-) 813 WP_002015180.1 pyruvate, water dikinase regulatory protein -
  QRE64_RS21495 (QRE64_21440) - 4176335..4176967 (-) 633 WP_002015181.1 helix-turn-helix transcriptional regulator -
  QRE64_RS21500 (QRE64_21445) recO 4177074..4177820 (-) 747 WP_002088669.1 DNA repair protein RecO Machinery gene
  QRE64_RS21505 (QRE64_21450) - 4177854..4177997 (-) 144 WP_000883924.1 YqzL family protein -
  QRE64_RS21510 (QRE64_21455) era 4178174..4179079 (-) 906 WP_002088672.1 GTPase Era -
  QRE64_RS21515 (QRE64_21460) - 4179072..4179470 (-) 399 WP_002015184.1 cytidine deaminase -
  QRE64_RS21520 (QRE64_21465) - 4179570..4179923 (-) 354 WP_002143170.1 diacylglycerol kinase family protein -
  QRE64_RS21525 (QRE64_21470) ybeY 4179920..4180390 (-) 471 WP_002165062.1 rRNA maturation RNase YbeY -
  QRE64_RS21530 (QRE64_21475) - 4180387..4182531 (-) 2145 WP_016120818.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28649.18 Da        Isoelectric Point: 7.7708

>NTDB_id=846209 QRE64_RS21500 WP_002088669.1 4177074..4177820(-) (recO) [Bacillus mycoides strain SIN3.1]
MFQKVEGIVIRTTDYGETNKIVTIYSREFGKVSAMARGAKKPKSRLAAISQLMTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYASFIIELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRTVLNTYYDEYCGIYLKTRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=846209 QRE64_RS21500 WP_002088669.1 4177074..4177820(-) (recO) [Bacillus mycoides strain SIN3.1]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGTACGACAGATTACGGAGAAACAAATAAGATTGTTACAATATACTCACG
GGAATTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCGAAGAAGCCGAAGAGTCGGTTAGCAGCTATTTCGCAACTTATGA
CACATGGTCATTTTCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAGATTATTTCATCTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTATCGAATTAACTGATAAAGCAACAGAAGATAAGAAGCA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCACCCGTACTTTGATACATGTGCTATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCGCGTCATGCGGAACAAGATCCGTATCGTATTCCGGTGGG
AGAGGCTGTTCATAAATTATTACGTCTCTTTTTTCACTTTGATTTACACCGGCTCGGTAATGTATCGGTGAAGGATAGTA
CAAAAAAACAAATGCGCACAGTATTGAATACATATTATGACGAATATTGTGGAATTTATTTGAAAACAAGGCGTTTCTTG
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8MN78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552