Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QRE64_RS21955 Genome accession   NZ_CP128137
Coordinates   4259611..4261947 (-) Length   778 a.a.
NCBI ID   WP_002129218.1    Uniprot ID   R8MNH9
Organism   Bacillus mycoides strain SIN3.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4254611..4266947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRE64_RS21930 (QRE64_21875) - 4257272..4257616 (+) 345 WP_282914983.1 PH domain-containing protein -
  QRE64_RS21935 (QRE64_21880) - 4257655..4258722 (-) 1068 WP_002129216.1 AI-2E family transporter -
  QRE64_RS21940 (QRE64_21885) - 4258899..4259111 (+) 213 WP_002015285.1 hypothetical protein -
  QRE64_RS21945 (QRE64_21890) - 4259148..4259276 (-) 129 WP_002015286.1 YrzQ family protein -
  QRE64_RS21950 (QRE64_21895) - 4259295..4259483 (-) 189 WP_002015288.1 hypothetical protein -
  QRE64_RS21955 (QRE64_21900) recD2 4259611..4261947 (-) 2337 WP_002129218.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QRE64_RS21960 (QRE64_21905) - 4262055..4262714 (-) 660 WP_113709312.1 tetratricopeptide repeat protein -
  QRE64_RS21965 (QRE64_21910) mnmA 4262825..4263940 (-) 1116 WP_002088752.1 tRNA 2-thiouridine(34) synthase MnmA -
  QRE64_RS21970 (QRE64_21915) - 4263957..4265102 (-) 1146 WP_087995792.1 cysteine desulfurase family protein -
  QRE64_RS21975 (QRE64_21920) - 4265138..4265554 (-) 417 WP_000704117.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87194.85 Da        Isoelectric Point: 5.2043

>NTDB_id=846211 QRE64_RS21955 WP_002129218.1 4259611..4261947(-) (recD2) [Bacillus mycoides strain SIN3.1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGGVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNLNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=846211 QRE64_RS21955 WP_002129218.1 4259611..4261947(-) (recD2) [Bacillus mycoides strain SIN3.1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAATTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCGG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGTGTGT
ATTTAGCTTCGTTATTTTACTCTGAAAAAGGCGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAGGAAACCCCTGCA
TTTCCTGAAGCAGAAGTGTTAAAGACATTAGGTGAAATTGAAGAACAGCTAAAGGTACAGTATGCACCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACTACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCGCTTCACGGGCTATCACTAAATCTAAATGAATATAGTGATGACAATCCATTTCCAATA
CTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGGCTTCCGGCGTGCACAATTCATCGCCT
GCTTGGATGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACAGACCCTGTTCAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTGGCAAATCAATTGTTTAAATCCTTGCCGACGAACATCCAAGTAATCGTTGTAGGTGAT
GAAGACCAATTACCATCGGTAGGACCTGGACAAGTGTTGAAAGATTTATTAAATGCAGGTGCCATTCCAACGGTAAAACT
CACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGGACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGCTTTAGTGCAAGAGATGTACAAGTATTGGCACCAATGTATCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGCAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCAGTATTTTATGCGAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACATATAC
AAAGCCGGATTTAAATCAAATTACGCATGCCTATTGCTGCTCGATTCATAAATCGCAAGGTAGTGAATTCCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGTGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8MNH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577