Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QRD86_RS18585 Genome accession   NZ_CP128116
Coordinates   3519875..3520597 (-) Length   240 a.a.
NCBI ID   WP_142396176.1    Uniprot ID   -
Organism   Bacillus halotolerans strain KF17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3514875..3525597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS18550 (QRD86_18545) fliW 3515017..3515448 (-) 432 WP_024123020.1 flagellar assembly protein FliW -
  QRD86_RS18555 (QRD86_18550) - 3515469..3516044 (-) 576 WP_254517897.1 DUF6470 family protein -
  QRD86_RS18560 (QRD86_18555) flgL 3516091..3516987 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  QRD86_RS18565 (QRD86_18560) flgK 3516997..3518520 (-) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  QRD86_RS18570 (QRD86_18565) flgN 3518539..3519021 (-) 483 WP_254517898.1 flagellar protein FlgN -
  QRD86_RS18575 (QRD86_18570) flgM 3519036..3519302 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRD86_RS18580 (QRD86_18575) - 3519382..3519801 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  QRD86_RS18585 (QRD86_18580) comFC 3519875..3520597 (-) 723 WP_142396176.1 double zinc ribbon domain-containing protein Machinery gene
  QRD86_RS18590 (QRD86_18585) - 3520561..3520857 (-) 297 WP_024123028.1 competence protein ComFB -
  QRD86_RS18595 (QRD86_18590) comFA 3520903..3522300 (-) 1398 WP_106021953.1 ATP-dependent helicase ComFA Machinery gene
  QRD86_RS18600 (QRD86_18595) - 3522407..3523252 (-) 846 WP_106019639.1 DegV family protein -
  QRD86_RS18605 (QRD86_18600) degU 3523349..3524038 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QRD86_RS18610 (QRD86_18605) degS 3524121..3525278 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27052.24 Da        Isoelectric Point: 8.4157

>NTDB_id=846062 QRD86_RS18585 WP_142396176.1 3519875..3520597(-) (comFC) [Bacillus halotolerans strain KF17]
MRNETGGGSKKLICLLCDSQFSQAVSWCSLFLLKPDDRVCQSCRNKLQIIKGAICPLCGRPQTAHEVCADCEAWKSRIDD
GLRLSQNRSVYLYNDMMKETLARMKFRGDAAIISAFKNDFSSEFSAVYPDKRLVLVPIPLSEERKVERGFNQSQMLAECL
NRPILNPLIRLNNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEKGEAGSVSSFTLVRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=846062 QRD86_RS18585 WP_142396176.1 3519875..3520597(-) (comFC) [Bacillus halotolerans strain KF17]
ATGCGAAACGAGACAGGAGGAGGCTCTAAAAAACTGATCTGTCTATTATGTGATTCACAATTTTCTCAAGCTGTTTCATG
GTGCTCACTATTCTTATTAAAACCTGACGACAGGGTCTGTCAGTCCTGCAGAAACAAATTACAGATCATCAAAGGGGCCA
TCTGTCCGCTTTGCGGCAGGCCTCAAACCGCTCATGAAGTGTGTGCGGATTGCGAGGCATGGAAATCAAGAATAGATGAC
GGCTTAAGGCTCAGTCAAAACCGTTCTGTTTACTTATATAATGACATGATGAAAGAAACGCTCGCCCGAATGAAATTCAG
GGGAGATGCAGCGATAATAAGCGCTTTTAAAAATGACTTTTCCTCAGAATTCTCTGCTGTCTATCCAGATAAACGCCTTG
TGCTCGTTCCCATTCCGTTAAGCGAAGAACGGAAAGTTGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTA
AACCGGCCCATCCTCAATCCTCTCATCCGCCTGAATAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAGCGCCTGCTTTC
AGAGCATGTTTTTGAAACAAAAAACAGCTCGGTTGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACTACGGGCG
CCACTTTGCACTATGCTGCCCGCTGTTTATTGGAGAAAGGCGAAGCTGGTTCTGTGTCATCTTTTACCTTAGTGAGAAGC
TAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(184-238)

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

75.833

100

0.758