Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QRD86_RS18605 Genome accession   NZ_CP128116
Coordinates   3523349..3524038 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain KF17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3518349..3529038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD86_RS18570 (QRD86_18565) flgN 3518539..3519021 (-) 483 WP_254517898.1 flagellar protein FlgN -
  QRD86_RS18575 (QRD86_18570) flgM 3519036..3519302 (-) 267 WP_024123025.1 flagellar biosynthesis anti-sigma factor FlgM -
  QRD86_RS18580 (QRD86_18575) - 3519382..3519801 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  QRD86_RS18585 (QRD86_18580) comFC 3519875..3520597 (-) 723 WP_142396176.1 double zinc ribbon domain-containing protein Machinery gene
  QRD86_RS18590 (QRD86_18585) - 3520561..3520857 (-) 297 WP_024123028.1 competence protein ComFB -
  QRD86_RS18595 (QRD86_18590) comFA 3520903..3522300 (-) 1398 WP_106021953.1 ATP-dependent helicase ComFA Machinery gene
  QRD86_RS18600 (QRD86_18595) - 3522407..3523252 (-) 846 WP_106019639.1 DegV family protein -
  QRD86_RS18605 (QRD86_18600) degU 3523349..3524038 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QRD86_RS18610 (QRD86_18605) degS 3524121..3525278 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  QRD86_RS18615 (QRD86_18610) - 3525495..3526148 (+) 654 WP_044159478.1 YigZ family protein -
  QRD86_RS18620 (QRD86_18615) - 3526148..3527326 (+) 1179 WP_024123032.1 LCP family protein -
  QRD86_RS18625 (QRD86_18620) - 3527398..3528474 (-) 1077 WP_151174552.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=846064 QRD86_RS18605 WP_003219701.1 3523349..3524038(-) (degU) [Bacillus halotolerans strain KF17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=846064 QRD86_RS18605 WP_003219701.1 3523349..3524038(-) (degU) [Bacillus halotolerans strain KF17]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1