Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QMG68_RS19260 Genome accession   NZ_AP027188
Coordinates   3656754..3657491 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PV0838     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3651754..3662491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG68_RS19245 (PV0838_3692) clpC 3652208..3654781 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  QMG68_RS19250 (PV0838_3693) yfiH 3654911..3655642 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  QMG68_RS19255 (PV0838_3694) rluD 3655639..3656619 (-) 981 WP_000079094.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QMG68_RS19260 (PV0838_3695) comL 3656754..3657491 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  QMG68_RS19265 (PV0838_3696) raiA 3657762..3658103 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QMG68_RS19270 pheL 3658207..3658254 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QMG68_RS19275 (PV0838_3697) pheA 3658353..3659513 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  QMG68_RS19280 (PV0838_3698) tyrA 3659556..3660677 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  QMG68_RS19285 (PV0838_3699) aroF 3660688..3661758 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  QMG68_RS19290 (PV0838_3700) yfiL 3661968..3662333 (+) 366 WP_001496158.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=84606 QMG68_RS19260 WP_000197686.1 3656754..3657491(+) (comL) [Escherichia coli strain PV0838]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=84606 QMG68_RS19260 WP_000197686.1 3656754..3657491(+) (comL) [Escherichia coli strain PV0838]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment