Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QRD88_RS05200 Genome accession   NZ_CP128114
Coordinates   1028082..1028660 (+) Length   192 a.a.
NCBI ID   WP_286099016.1    Uniprot ID   -
Organism   Bacillus safensis strain G6S3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1023082..1033660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRD88_RS05180 (QRD88_05175) - 1023580..1024875 (-) 1296 WP_197202934.1 globin-coupled sensor protein -
  QRD88_RS05185 (QRD88_05180) - 1024967..1026499 (-) 1533 WP_125587309.1 FAD-dependent oxidoreductase -
  QRD88_RS05190 (QRD88_05185) - 1026639..1027499 (+) 861 WP_197202935.1 SDR family oxidoreductase -
  QRD88_RS05195 (QRD88_05190) - 1027556..1027792 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  QRD88_RS05200 (QRD88_05195) comK 1028082..1028660 (+) 579 WP_286099016.1 competence protein ComK Regulator
  QRD88_RS05205 (QRD88_05200) - 1028960..1029442 (+) 483 WP_024425482.1 hypothetical protein -
  QRD88_RS05210 (QRD88_05205) - 1029474..1029626 (-) 153 Protein_963 PLP-dependent aminotransferase family protein -
  QRD88_RS05215 (QRD88_05210) - 1029735..1030013 (+) 279 WP_171464240.1 barstar family protein -
  QRD88_RS05220 (QRD88_05215) ceuB 1030175..1031125 (+) 951 WP_056766093.1 ABC transporter permease Machinery gene
  QRD88_RS05225 (QRD88_05220) - 1031118..1032068 (+) 951 WP_286099017.1 iron chelate uptake ABC transporter family permease subunit -
  QRD88_RS05230 (QRD88_05225) - 1032059..1032817 (+) 759 WP_024426539.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22324.29 Da        Isoelectric Point: 8.7996

>NTDB_id=845944 QRD88_RS05200 WP_286099016.1 1028082..1028660(+) (comK) [Bacillus safensis strain G6S3]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVESKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=845944 QRD88_RS05200 WP_286099016.1 1028082..1028660(+) (comK) [Bacillus safensis strain G6S3]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATCAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCAGGAACATACGAAGTAACAGGAATTTCTCACAAACCCCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGC
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAATAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62