Detailed information NTG0845640

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: VXF94_RS17780
• Genome accession: NZ_CP143956
• Coordinates: 3443743..3445005 (+)
• Length: 420 a.a.
• NCBI ID: WP_014470784.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 108
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 3438743..3450005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VXF94_RS17760 (VXF94_17760)	leuC	3438825..3440243 (+)	1419	WP_013353085.1	3-isopropylmalate dehydratase large subunit	-
VXF94_RS17765 (VXF94_17765)	leuD	3440258..3440857 (+)	600	WP_013353084.1	3-isopropylmalate dehydratase small subunit	-
VXF94_RS17770 (VXF94_17770)	ddcA	3440976..3441980 (+)	1005	WP_013353083.1	DNA damage checkpoint antagonist DdcA	-
VXF94_RS17775 (VXF94_17775)	tig	3442197..3443471 (+)	1275	WP_014470785.1	trigger factor	-
VXF94_RS17780 (VXF94_17780)	clpX	3443743..3445005 (+)	1263	WP_014470784.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
VXF94_RS17785 (VXF94_17785)	lonB	3445156..3446814 (+)	1659	WP_013353080.1	ATP-dependent protease LonB	-
VXF94_RS17790 (VXF94_17790)	lon	3447013..3449337 (+)	2325	WP_013353079.1	endopeptidase La	-
VXF94_RS17795 (VXF94_17795)	yihA	3449334..3449921 (+)	588	WP_013353078.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46261.03 Da
• Isoelectric Point: 4.4885

>NTDB_id=845640 VXF94_RS17780 WP_014470784.1 3443743..3445005(+) (clpX) [Bacillus amyloliquefaciens strain Fad 108]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKVADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELDFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=845640 VXF94_RS17780 WP_014470784.1 3443743..3445005(+) (clpX) [Bacillus amyloliquefaciens strain Fad 108]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGCATCGAGCTCTGTACAGAAATCGTAGAAGAAGAGCTGGGCACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCATTAATCGGGCCGACTGGAAGCGGGAAAACACTTCTCGCCCAGACACTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATTCTCCTC
AAACTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCGGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGTAAATCTGAAAACCCGTCCATCACACGTGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGGCGCAAACATCCTCATCAGGAATTCATTCAGATCGATACGACGAACATT
CTGTTCATTTGCGGGGGTGCATTTGACGGCATCGAACAAATCATTAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGTGGCAGACTTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTTCGTTTCGGGC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCTAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTAGATGATGTCGAGCTTGATTTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGAAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAGGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGACATTGAAAAATGTGTCATTACCGGAGCGACAGTGGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACTGTTGTCGGTCAAGATAAAACATCAGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.01	94.524	0.643
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569