Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   VXF94_RS11245 Genome accession   NZ_CP143956
Coordinates   2199131..2199925 (+) Length   264 a.a.
NCBI ID   WP_013354215.1    Uniprot ID   A0A9P1JLP7
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2194131..2204925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS11225 (VXF94_11225) walR 2194392..2195099 (+) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -
  VXF94_RS11230 (VXF94_11230) walK 2195106..2196941 (+) 1836 WP_014471295.1 cell wall metabolism sensor histidine kinase WalK -
  VXF94_RS11235 (VXF94_11235) yycH 2196931..2198289 (+) 1359 WP_014471294.1 two-component system activity regulator YycH -
  VXF94_RS11240 (VXF94_11240) - 2198276..2199115 (+) 840 WP_014472401.1 two-component system regulatory protein YycI -
  VXF94_RS11245 (VXF94_11245) vicX 2199131..2199925 (+) 795 WP_013354215.1 MBL fold metallo-hydrolase Regulator
  VXF94_RS11250 (VXF94_11250) htrA 2200012..2201208 (+) 1197 WP_014472400.1 S1C family serine protease Regulator
  VXF94_RS11255 (VXF94_11255) - 2201581..2202492 (-) 912 WP_013354213.1 PepSY domain-containing protein -
  VXF94_RS11260 (VXF94_11260) - 2202706..2203389 (+) 684 WP_013354212.1 response regulator transcription factor -
  VXF94_RS11265 (VXF94_11265) - 2203386..2204804 (+) 1419 WP_014471292.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.16 Da        Isoelectric Point: 5.7992

>NTDB_id=845602 VXF94_RS11245 WP_013354215.1 2199131..2199925(+) (vicX) [Bacillus amyloliquefaciens strain Fad 108]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEQIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=845602 VXF94_RS11245 WP_013354215.1 2199131..2199925(+) (vicX) [Bacillus amyloliquefaciens strain Fad 108]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCCTTTCT
GGTGGATGCCGGCCTGAGCGGAAAAGCGATGGACGGGCTGATGGAGCAAATCGGCCGTAAGATAGACGACGTGGACGGCA
TCTTTGTCACTCATGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGTCTTCCGGTATACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGACACCGGACAAAAGTTTTTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTCTATGTTTTCC
ACTACCAAGGCAGAAAGCTCGCGCTGATGACGGACACCGGTTATGTGAGCGACAGAATGAAGGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGACGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAACGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCAAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCACGCA
TCTACTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCAAAA
GGATTTGTCGCGGGGGAAACGTTTCAATTATTTGATACCGATCCGAAAATCCCGACGCCTCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527