Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   VXF94_RS05920 Genome accession   NZ_CP143956
Coordinates   1189017..1189661 (-) Length   214 a.a.
NCBI ID   WP_014469961.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 108     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184017..1194661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXF94_RS05895 (VXF94_05895) nsrR 1185612..1186046 (+) 435 WP_014469964.1 nitric oxide-sensing transcriptional repressor NsrR -
  VXF94_RS05900 (VXF94_05900) - 1186227..1187678 (+) 1452 WP_014471646.1 peptidoglycan endopeptidase -
  VXF94_RS05905 (VXF94_05905) - 1187721..1188044 (-) 324 WP_013351652.1 DUF3889 domain-containing protein -
  VXF94_RS05910 (VXF94_05910) - 1188236..1188478 (+) 243 WP_013351651.1 YhdB family protein -
  VXF94_RS05915 (VXF94_05915) - 1188492..1189016 (-) 525 WP_014469962.1 NADPH-dependent FMN reductase -
  VXF94_RS05920 (VXF94_05920) vraR 1189017..1189661 (-) 645 WP_014469961.1 response regulator Regulator
  VXF94_RS05925 (VXF94_05925) - 1189661..1190800 (-) 1140 WP_014469960.1 GAF domain-containing sensor histidine kinase -
  VXF94_RS05930 (VXF94_05930) - 1190945..1192687 (-) 1743 WP_014469959.1 phospho-sugar mutase -
  VXF94_RS05935 (VXF94_05935) glpD 1192820..1194487 (-) 1668 WP_013351646.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23828.21 Da        Isoelectric Point: 6.5013

>NTDB_id=845571 VXF94_RS05920 WP_014469961.1 1189017..1189661(-) (vraR) [Bacillus amyloliquefaciens strain Fad 108]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTGPDIILMDLSMPDMDGIEAANIAAERFPDISIVVL
TSYSDREHVIPALKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLNHMVQDDQNKEKYYQLTPREKDVLQEI
AKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNISGKAVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=845571 VXF94_RS05920 WP_014469961.1 1189017..1189661(-) (vraR) [Bacillus amyloliquefaciens strain Fad 108]
ATGAAAATTGTGATCGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGATATTGA
AGTTGTCGGTGAGGCGTCTACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGGGCCGGACATCATTTTAATGGACT
TATCAATGCCTGATATGGATGGCATTGAAGCGGCAAACATTGCGGCTGAACGATTTCCTGACATCAGCATAGTCGTGTTG
ACCAGCTATTCTGACCGGGAGCATGTCATTCCCGCCCTAAAAGCCGGCGCCAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGACTTAGTGAAAACGCTCCGTGAAGTATATTCCGGACGTTACAGGCTGTCGGCGGACATTGTGCCTCACGTGCTCA
ATCATATGGTTCAGGATGATCAGAATAAGGAAAAATATTATCAGCTGACCCCTCGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCCGCATCTCTGTTTATTTCTGAAAAAACAGTGAAGACCCATGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAAGCGGCATTGTATGCCGTAAAATATAATATTTCTGGAAAGGCGGTAA
AATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.269

97.196

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.393