Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   JQN53_RS08005 Genome accession   NZ_AP024301
Coordinates   1511593..1512474 (+) Length   293 a.a.
NCBI ID   WP_203971006.1    Uniprot ID   -
Organism   Thermus thermophilus strain HB5002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506593..1517474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN53_RS07980 (TthHB5002_15950) - 1507590..1508081 (+) 492 WP_011173430.1 DUF5317 domain-containing protein -
  JQN53_RS07985 (TthHB5002_15960) - 1508136..1509140 (+) 1005 WP_024119688.1 homoisocitrate dehydrogenase -
  JQN53_RS07990 (TthHB5002_15970) pilM 1509276..1510409 (+) 1134 WP_203971002.1 type IV pilus assembly protein PilM Machinery gene
  JQN53_RS07995 (TthHB5002_15980) pilN 1510402..1511025 (+) 624 WP_011228637.1 competence protein Machinery gene
  JQN53_RS08000 (TthHB5002_15990) pilO 1511015..1511596 (+) 582 WP_203971004.1 type 4a pilus biogenesis protein PilO Machinery gene
  JQN53_RS08005 (TthHB5002_16000) pilW 1511593..1512474 (+) 882 WP_203971006.1 competence protein Machinery gene
  JQN53_RS08010 (TthHB5002_16010) pilQ 1512471..1514744 (+) 2274 WP_203971007.1 secretin N-terminal domain-containing protein Machinery gene
  JQN53_RS08015 (TthHB5002_16020) aroC 1514803..1515954 (+) 1152 WP_203971008.1 chorismate synthase -
  JQN53_RS08020 (TthHB5002_16030) - 1515979..1516533 (+) 555 WP_008632876.1 shikimate kinase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 30049.52 Da        Isoelectric Point: 4.4553

>NTDB_id=84549 JQN53_RS08005 WP_203971006.1 1511593..1512474(+) (pilW) [Thermus thermophilus strain HB5002]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGNVALWYVGLYLPAQVAEAPTPVPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPAPVPEGPAVRVQTPAQAPQAAPATRPIPG
TSGALPAPKILSPALSAPLPQARETPPKVAVPTALVEAPLPGPEEKGAEEEPPTPASPLERLVAEKGLRLSGTLLGPVSV
AILESKEGYLVVPAGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=84549 JQN53_RS08005 WP_203971006.1 1511593..1512474(+) (pilW) [Thermus thermophilus strain HB5002]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGAACGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGTCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCACCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCGGCGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCCGCCCAAGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCC
CAAGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAAGAGGAGCCCCCCA
CCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTG
GCCATCCTGGAGAGCAAGGAGGGCTACCTCGTCGTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCA
GGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAGGTGGCCAAT
GA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

97.611

100

0.976

Multiple sequence alignment