Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QSG87_RS01195 Genome accession   NZ_CP127923
Coordinates   220111..221682 (-) Length   523 a.a.
NCBI ID   WP_087513574.1    Uniprot ID   A0A3B7LYT6
Organism   Acinetobacter chinensis strain SAAc573     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 215111..226682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG87_RS01180 (QSG87_01180) gpmI 215917..217464 (+) 1548 WP_317023857.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  QSG87_RS01185 (QSG87_01185) - 217486..218655 (+) 1170 WP_317023858.1 S41 family peptidase -
  QSG87_RS01190 (QSG87_01190) pilR 218665..220035 (-) 1371 WP_394357253.1 sigma-54-dependent transcriptional regulator Regulator
  QSG87_RS01195 (QSG87_01195) pilS 220111..221682 (-) 1572 WP_087513574.1 PAS domain-containing sensor histidine kinase Regulator
  QSG87_RS01200 (QSG87_01200) - 221707..222342 (-) 636 WP_087513575.1 response regulator -
  QSG87_RS01205 (QSG87_01205) pbpG 222578..223642 (+) 1065 WP_317023860.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  QSG87_RS01210 (QSG87_01210) thrC 223736..224875 (-) 1140 WP_317023861.1 threonine synthase -
  QSG87_RS01215 (QSG87_01215) - 224937..226241 (-) 1305 WP_317023862.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 523 a.a.        Molecular weight: 59266.98 Da        Isoelectric Point: 6.4905

>NTDB_id=845231 QSG87_RS01195 WP_087513574.1 220111..221682(-) (pilS) [Acinetobacter chinensis strain SAAc573]
MIQNSLTSEMNQYHLGMWYAAYRMIISCCMLLIFIITSVQLASDYQHPQLYLYTLIGYFLMGCLQLIGMKNIPVHITQQL
TWIFVVDVAVLSLLTFAANGPNLHLSLLFVITIFAASLLLNSRKALVITLIAVISVIYQHFISSLFALSSLNNIGNSVLL
AIMFFVVYGCGLVAVRRFQILETLNFHQSIELDRLQNINRYILEQVEMGYLVLDENCHVVLSNPAACTLLGISPLYAFNI
YPLYKLQPDLFDILKFDQLQNGEKFQFESQFSSYLVHIEVQKLIVPHQTLTLLVLQDARRINQQVQQLKLAALGQLSASI
AHEIRNPLAAIAQANVLFAGSDAEQQQSLSQMISRQTQRIDKIISDTLSMVRNRETHPTEIQLPTFIPQFIKEDLSDISQ
KIRCHLQSSDLTVCFDESQLRQVLINLIRNAIRHNAPDQNCIELVIQAEGKNIQIDVRDYGSGVALQDIAYLFQPFFSTE
ITGTGLGLYLSHSFCEANQAKLSYVEQKQGACFRIECPRVYLN

Nucleotide


Download         Length: 1572 bp        

>NTDB_id=845231 QSG87_RS01195 WP_087513574.1 220111..221682(-) (pilS) [Acinetobacter chinensis strain SAAc573]
ATGATCCAGAACTCACTCACTTCAGAAATGAATCAATATCATCTGGGCATGTGGTACGCTGCATACCGCATGATTATTTC
ATGCTGTATGTTACTGATTTTTATTATTACCTCTGTACAGCTGGCATCTGACTATCAACACCCACAGCTTTACTTATATA
CATTGATCGGTTATTTCCTGATGGGTTGTCTGCAACTGATCGGGATGAAAAATATTCCTGTTCATATTACCCAGCAACTG
ACCTGGATTTTTGTGGTCGATGTTGCAGTCCTCAGTCTGCTGACCTTTGCTGCCAATGGTCCCAATCTGCATCTAAGCCT
GCTCTTTGTCATCACTATTTTTGCAGCTTCTTTATTATTGAATTCAAGAAAAGCGCTGGTGATTACACTGATTGCTGTGA
TCAGTGTCATTTATCAGCATTTTATCAGCAGCCTGTTTGCCCTCAGCTCATTAAACAATATTGGAAACAGCGTACTGCTC
GCCATCATGTTTTTTGTTGTGTACGGCTGTGGGCTAGTAGCTGTCCGTCGTTTTCAGATTCTGGAAACACTGAATTTCCA
CCAGTCCATCGAACTGGACCGCTTACAGAACATTAACCGCTACATTCTGGAACAGGTGGAAATGGGTTATCTGGTGCTGG
ATGAAAACTGCCATGTGGTGCTGAGTAATCCTGCTGCCTGCACCCTGCTGGGTATCTCTCCGCTGTATGCCTTTAATATT
TATCCACTGTATAAATTACAGCCCGACCTGTTTGATATTCTGAAGTTTGATCAGTTACAGAACGGTGAAAAATTTCAGTT
TGAATCACAGTTCAGCAGTTATCTGGTGCATATTGAAGTCCAGAAACTGATTGTGCCTCACCAGACGCTGACACTGCTGG
TGCTTCAGGATGCACGGCGTATCAATCAACAGGTTCAGCAGCTGAAACTGGCTGCCTTGGGACAGCTGTCTGCCAGTATT
GCCCATGAAATCCGAAACCCTCTTGCTGCTATTGCACAGGCCAATGTCCTGTTTGCCGGCAGTGATGCAGAGCAGCAGCA
AAGTCTGAGCCAGATGATCAGTCGGCAGACTCAACGGATTGATAAAATTATCAGTGATACACTCAGTATGGTGCGCAACA
GGGAAACCCATCCGACTGAAATTCAGCTTCCGACCTTTATTCCCCAGTTTATTAAAGAAGATCTTTCTGACATCTCCCAG
AAAATCCGCTGTCATCTACAAAGCAGCGACCTGACTGTCTGCTTTGATGAATCACAGCTCAGACAGGTACTGATCAATCT
GATCCGCAATGCAATCCGGCATAATGCTCCCGATCAGAACTGTATTGAACTGGTCATACAGGCAGAGGGCAAAAACATTC
AGATTGACGTCCGTGACTATGGTTCTGGCGTTGCCCTGCAGGATATTGCCTACCTGTTTCAACCATTTTTCAGTACCGAA
ATTACCGGAACTGGTTTAGGATTGTATCTATCACACAGCTTCTGCGAAGCCAATCAGGCTAAGCTGAGCTATGTAGAACA
AAAACAAGGGGCTTGTTTCAGGATTGAATGCCCACGCGTTTATTTAAATTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LYT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.921

97.323

0.583