Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSG85_RS01955 Genome accession   NZ_CP127906
Coordinates   419524..420159 (-) Length   211 a.a.
NCBI ID   WP_032050895.1    Uniprot ID   A0A009I839
Organism   Acinetobacter baumannii strain SAAb472     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414524..425159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG85_RS01920 (QSG85_01920) mlaE 414860..415636 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QSG85_RS01925 (QSG85_01925) - 415636..416316 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QSG85_RS01930 (QSG85_01930) - 416343..416984 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  QSG85_RS01935 (QSG85_01935) - 416996..417283 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  QSG85_RS01940 (QSG85_01940) - 417353..418366 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  QSG85_RS01945 (QSG85_01945) - 418524..419105 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  QSG85_RS01950 (QSG85_01950) - 419120..419521 (+) 402 Protein_375 NUDIX hydrolase -
  QSG85_RS01955 (QSG85_01955) comF 419524..420159 (-) 636 WP_032050895.1 ComF family protein Machinery gene
  QSG85_RS01960 (QSG85_01960) recG 420152..422197 (-) 2046 WP_032050894.1 ATP-dependent DNA helicase RecG -
  QSG85_RS01965 (QSG85_01965) - 422218..423033 (+) 816 WP_032050893.1 NAD-dependent epimerase/dehydratase family protein -
  QSG85_RS01970 (QSG85_01970) adeT2 423113..424099 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24618.80 Da        Isoelectric Point: 9.7140

>NTDB_id=845161 QSG85_RS01955 WP_032050895.1 419524..420159(-) (comF) [Acinetobacter baumannii strain SAAb472]
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALNQALKQLGCTSIHASCLAAASSTLY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=845161 QSG85_RS01955 WP_032050895.1 419524..420159(-) (comF) [Acinetobacter baumannii strain SAAb472]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAACAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCTTTATTACTCGCTAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTGAA
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATTATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I839

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.052

100

0.991
  comF Acinetobacter baumannii D1279779

98.104

100

0.981