Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSG84_RS12490 Genome accession   NZ_CP127893
Coordinates   2680521..2681156 (-) Length   211 a.a.
NCBI ID   WP_410487447.1    Uniprot ID   A0AA97HYP2
Organism   Acinetobacter sp. SAAs470     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2675521..2686156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS12455 (QSG84_12450) mlaE 2675859..2676638 (+) 780 WP_317030690.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  QSG84_RS12460 (QSG84_12455) - 2676638..2677300 (+) 663 WP_317030691.1 outer membrane lipid asymmetry maintenance protein MlaD -
  QSG84_RS12465 (QSG84_12460) - 2677319..2677948 (+) 630 WP_317030692.1 ABC transporter substrate-binding protein -
  QSG84_RS12470 (QSG84_12465) - 2677966..2678259 (+) 294 WP_317030693.1 STAS domain-containing protein -
  QSG84_RS12475 (QSG84_12470) - 2678346..2679359 (-) 1014 WP_317030694.1 CorA family divalent cation transporter -
  QSG84_RS12480 (QSG84_12475) - 2679512..2680111 (+) 600 WP_317030695.1 TIGR00730 family Rossman fold protein -
  QSG84_RS12485 (QSG84_12480) - 2680108..2680524 (+) 417 WP_317030696.1 NUDIX domain-containing protein -
  QSG84_RS12490 (QSG84_12485) comF 2680521..2681156 (-) 636 WP_410487447.1 ComF family protein Machinery gene
  QSG84_RS12495 (QSG84_12490) recG 2681143..2683188 (-) 2046 WP_317030698.1 ATP-dependent DNA helicase RecG -
  QSG84_RS12500 (QSG84_12495) - 2683225..2684040 (+) 816 WP_317030699.1 NAD(P)H-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24823.15 Da        Isoelectric Point: 8.9172

>NTDB_id=845142 QSG84_RS12490 WP_410487447.1 2680521..2681156(-) (comF) [Acinetobacter sp. SAAs470]
MSMFKFIAEIREFFNPYLACQLCAIGRQQYYGLCHDCWTELPWQHELVYKQQMCFYSACRYCYPMDRIIQQFKYQQQLQF
QALLAGLLLQLQLPKVQALVAMPISTQRLNTRGYNQALLIAKIIAKVRNIPIWQPIIRTHQHAQTGLNRFERLDNIYHQF
HIKPRLDRHYHHILIIDDVVTTGNSILALKHSLTLLGCTQIYACCIAHTPS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=845142 QSG84_RS12490 WP_410487447.1 2680521..2681156(-) (comF) [Acinetobacter sp. SAAs470]
ATGTCTATGTTTAAATTCATCGCAGAAATACGGGAATTTTTTAATCCATACTTAGCATGCCAATTATGTGCTATCGGTAG
ACAACAATATTATGGCCTCTGTCACGACTGCTGGACAGAATTACCCTGGCAACATGAGCTTGTTTACAAACAACAAATGT
GTTTTTACAGCGCCTGCCGATATTGCTATCCCATGGATCGTATTATTCAACAATTTAAATATCAGCAGCAACTACAATTT
CAAGCATTATTGGCTGGCCTATTACTGCAGCTCCAGCTACCCAAAGTACAAGCACTGGTTGCAATGCCCATTTCGACACA
ACGCTTAAACACCAGAGGCTATAATCAGGCATTGCTCATCGCAAAAATAATCGCAAAAGTTCGTAATATCCCCATCTGGC
AACCGATTATACGCACACATCAACACGCACAAACAGGACTAAATCGCTTTGAGCGCTTAGATAATATTTACCATCAATTT
CATATCAAACCCAGATTAGATCGACATTATCATCATATCTTAATTATCGATGATGTAGTCACAACCGGAAATTCGATACT
GGCATTAAAGCATAGCCTGACTTTGCTGGGTTGCACACAGATTTATGCATGTTGTATAGCACATACGCCATCTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

49.282

99.052

0.488
  comF Acinetobacter baumannii strain A118

49.282

99.052

0.488