Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QSG84_RS09830 Genome accession   NZ_CP127893
Coordinates   2099380..2100795 (+) Length   471 a.a.
NCBI ID   WP_317030225.1    Uniprot ID   A0AA97HY87
Organism   Acinetobacter sp. SAAs470     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2094380..2105795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG84_RS09815 (QSG84_09810) - 2095412..2096443 (-) 1032 WP_410487440.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QSG84_RS09820 (QSG84_09815) - 2096663..2097298 (+) 636 WP_317030223.1 response regulator -
  QSG84_RS09825 (QSG84_09820) - 2097828..2099366 (+) 1539 WP_317030224.1 HAMP domain-containing sensor histidine kinase -
  QSG84_RS09830 (QSG84_09825) pilR 2099380..2100795 (+) 1416 WP_317030225.1 sigma-54 dependent transcriptional regulator Regulator
  QSG84_RS09835 (QSG84_09830) - 2100880..2101743 (-) 864 WP_317032660.1 SDR family oxidoreductase -
  QSG84_RS09840 (QSG84_09835) - 2101875..2102255 (+) 381 WP_317030226.1 helix-turn-helix domain-containing protein -
  QSG84_RS09845 (QSG84_09840) - 2102288..2103457 (-) 1170 WP_317030227.1 S41 family peptidase -
  QSG84_RS09850 (QSG84_09845) gpmI 2103475..2105022 (-) 1548 WP_317030228.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53038.38 Da        Isoelectric Point: 8.2911

>NTDB_id=845132 QSG84_RS09830 WP_317030225.1 2099380..2100795(+) (pilR) [Acinetobacter sp. SAAs470]
MMTLNPVVLLVDDEEDLCTLMSLTLARLGIQTQCAYGLQQAKKLLQIHHFNACLTDLNLPDGNGIQLVEHITAYFPNLPV
AILTAYGNMETAMRALKAGAFDFLNKPLSTQHLTQVLTQAFNYTHSVNITDPLARHPQLIGESSCMQQLRITLKKLARSQ
APVFITGESGTGKEVVAHLIHHLSKRHQGPFITINCGAIPADLMESEFFGYKKGSFTGATQHHTGLIVAADQGSLFLDEI
AELPLHMQVKLLRAVQEKKIRPIGSDIEIKVDFRIISASHQNLEQLIQQGKFRQDLFFRIHVMTVALPALRERGHDILLL
AHYFSHQIATEWGIANKPLSQQAQDYLLRYNYPGNVRELRNIIERAMTLCDDQVIDIQHLTTKIPSFFSTTTQHHTVQEK
NVAIHPSATNSPTSLLPNEGLEAHLAQIEKDILLQALSLTHWNKTLAAKKLRMSFRSLRYRLKKFKLDLPE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=845132 QSG84_RS09830 WP_317030225.1 2099380..2100795(+) (pilR) [Acinetobacter sp. SAAs470]
ATGATGACTTTAAACCCAGTCGTATTATTGGTTGACGATGAAGAAGATTTATGTACGCTGATGTCGCTAACATTAGCACG
CCTTGGTATCCAAACACAGTGTGCTTATGGTCTTCAACAAGCAAAAAAATTATTACAAATACATCATTTTAATGCCTGTC
TAACAGACTTAAATCTACCTGATGGTAACGGTATTCAACTGGTAGAACATATTACCGCCTACTTTCCTAACTTACCTGTC
GCCATACTCACTGCTTATGGCAATATGGAAACTGCAATGCGTGCACTTAAAGCTGGCGCTTTTGATTTTCTGAATAAACC
ACTGTCAACCCAACATTTAACACAAGTATTGACCCAAGCCTTCAATTATACCCATTCAGTGAATATCACGGATCCTTTAG
CACGACACCCACAACTGATTGGTGAATCTAGCTGTATGCAGCAGCTCAGAATAACCTTAAAAAAACTAGCACGCTCACAA
GCTCCTGTATTTATTACTGGTGAATCTGGCACAGGTAAAGAAGTTGTTGCCCACTTGATTCATCACTTAAGTAAACGTCA
TCAAGGGCCTTTTATTACCATTAATTGTGGTGCAATCCCCGCTGACTTAATGGAAAGTGAATTCTTTGGATACAAAAAAG
GCAGCTTTACGGGTGCAACACAACATCATACGGGATTAATTGTTGCAGCAGATCAAGGCAGTTTATTTTTAGATGAAATT
GCCGAACTTCCCTTACACATGCAAGTCAAATTATTACGTGCTGTTCAAGAAAAAAAAATACGGCCAATTGGTTCAGATAT
CGAAATTAAAGTCGATTTTCGTATTATTAGTGCCAGTCACCAAAATTTAGAGCAGCTCATACAACAAGGTAAATTCCGTC
AGGATTTATTTTTCCGTATTCATGTTATGACGGTTGCACTTCCTGCTTTACGTGAAAGAGGGCATGATATCCTGTTATTA
GCCCATTATTTTAGCCATCAAATTGCCACTGAATGGGGTATTGCAAATAAACCTTTAAGTCAGCAAGCTCAAGATTATCT
GTTGAGATATAATTATCCAGGCAATGTTCGTGAATTAAGAAATATCATAGAACGAGCAATGACTTTATGTGATGATCAAG
TTATTGATATACAGCATTTAACAACAAAAATACCCTCCTTCTTTAGTACGACAACACAACACCATACCGTACAAGAAAAA
AACGTAGCGATACATCCATCTGCGACGAACAGCCCGACAAGCCTGTTACCAAACGAAGGATTAGAAGCACATTTAGCACA
AATCGAGAAAGATATTTTACTTCAGGCACTCTCTTTAACACATTGGAATAAAACCTTAGCTGCCAAAAAATTAAGAATGT
CTTTCCGCTCACTCCGTTATCGTCTAAAGAAATTTAAACTCGATCTTCCTGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(425-465)

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

62.025

100

0.624
  pilR Pseudomonas aeruginosa PAK

46.32

98.089

0.454