Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QSG83_RS14845 Genome accession   NZ_CP127892
Coordinates   2867370..2868527 (+) Length   385 a.a.
NCBI ID   WP_317028082.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2862370..2873527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS14830 (QSG83_14840) - 2864071..2866110 (-) 2040 WP_317028081.1 TonB-dependent copper receptor -
  QSG83_RS14835 (QSG83_14845) - 2866174..2866602 (-) 429 WP_104853276.1 DUF2946 family protein -
  QSG83_RS14840 (QSG83_14850) def 2866718..2867248 (-) 531 WP_004970115.1 peptide deformylase -
  QSG83_RS14845 (QSG83_14855) tsaP 2867370..2868527 (+) 1158 WP_317028082.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QSG83_RS14850 (QSG83_14860) dprA 2868545..2869768 (+) 1224 WP_317028083.1 DNA-processing protein DprA Machinery gene
  QSG83_RS14855 (QSG83_14865) - 2869817..2870386 (+) 570 WP_253107206.1 L-threonylcarbamoyladenylate synthase -
  QSG83_RS14860 (QSG83_14870) - 2870421..2871477 (-) 1057 Protein_2664 RNA-guided endonuclease InsQ/TnpB family protein -
  QSG83_RS14865 (QSG83_14875) - 2871609..2871902 (+) 294 WP_228258776.1 hypothetical protein -
  QSG83_RS14870 (QSG83_14880) - 2871987..2872895 (-) 909 WP_317028084.1 DMT family transporter -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42216.46 Da        Isoelectric Point: 9.0905

>NTDB_id=845111 QSG83_RS14845 WP_317028082.1 2867370..2868527(+) (tsaP) [Acinetobacter towneri strain SAAt401]
MKKVLTDTSSFRVLGFKKQVLALAVCLIVGLGAISVAEAAPARNINPPALKASAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYTGKSTNLQPQIRVESLNNTIPVIPLEYIKHWL
ERSSIIAADALQGTPYILGTSDQRVLAAKGQSVYARGVGLEVGQRYAVYREGEPYILTDANGQKFNAGLELTQVATGIAV
RGENDITTLELTDTYNAEVRRGDRVLPVYDPMLPTLFYPTHAENVSTGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
HVFSVAQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGASLQAPRMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=845111 QSG83_RS14845 WP_317028082.1 2867370..2868527(+) (tsaP) [Acinetobacter towneri strain SAAt401]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCACTCGCGGTATGTCT
CATAGTGGGACTTGGTGCGATCAGTGTGGCTGAAGCAGCACCTGCACGAAACATCAATCCGCCTGCCTTAAAAGCCAGTG
CACCAAATGTGTATGTGGTAAAAAAAGGCGATACCTTATGGGATATTTCCAAAAAATTCCTGAACAACCCATTACGTTGG
CCTGAAATTTGGGCAAGCAACCGCCACGTAAAAAATCCACACTGGATTTTCCCGGGTGACCGCTTGTTAATGTGTACCTA
TGAAGGTCGCCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGCATTATTCGTCGTTACACAGGCAAGAGCACCA
ATTTACAGCCGCAAATTCGCGTAGAATCTTTAAATAATACAATTCCTGTGATCCCACTGGAATACATCAAGCACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAGATGCACTGCAAGGCACGCCTTATATTTTAGGTACTTCTGATCAACGCGTGTTGGC
TGCTAAAGGACAAAGCGTGTATGCACGTGGTGTAGGCCTAGAAGTTGGTCAACGTTATGCTGTCTATCGCGAAGGCGAAC
CATACATCCTAACCGATGCCAATGGTCAAAAATTCAATGCAGGCTTAGAACTCACTCAAGTTGCAACTGGTATTGCAGTA
CGTGGTGAAAATGACATTACTACGCTTGAGTTGACCGACACTTACAACGCTGAAGTGCGTCGTGGTGACCGTGTCTTGCC
TGTTTATGACCCAATGCTGCCAACCTTGTTCTACCCAACGCATGCTGAAAATGTCAGCACAGGTGGTCAGGTGCTACGTG
TGATGGGTTCGATTGGTACTGCAGCAAAACACAGTGTTGTGGCAATTGATCGCGGGACATTACATGGCGTGCAATCTGGT
CATGTGTTTAGCGTAGCGCAAAAAGGTGAAGTGGTCACCGACCCGAAAACCAAAGAGCGTGTTCAGCTTCCGGGCGAACG
CATTGGCAATATCATGGTCTTCAAGAGCTTTGACCACATTAGCTATGCCTATGTTTTAGACAGTGAATTACCAATTAAAG
TCGGTGCGAGCTTACAAGCACCACGAATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.455

100

0.655