Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   V2197_RS15580 Genome accession   NZ_CP143901
Coordinates   3293805..3294329 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA12_L1_25.22_ST207     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3288805..3299329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2197_RS15560 (V2197_15560) - 3288872..3291343 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  V2197_RS15565 (V2197_15565) pilM 3291528..3292592 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  V2197_RS15570 (V2197_15570) pilN 3292592..3293188 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  V2197_RS15575 (V2197_15575) pilO 3293185..3293808 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  V2197_RS15580 (V2197_15580) comL/pilP 3293805..3294329 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  V2197_RS15585 (V2197_15585) pilQ 3294383..3296527 (+) 2145 WP_033995309.1 type 4a pilus secretin PilQ Machinery gene
  V2197_RS15590 (V2197_15590) aroK 3296539..3297057 (+) 519 WP_003095833.1 shikimate kinase AroK -
  V2197_RS15595 (V2197_15595) aroB 3297107..3298213 (+) 1107 WP_009314395.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=845089 V2197_RS15580 WP_003095836.1 3293805..3294329(+) (comL/pilP) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=845089 V2197_RS15580 WP_003095836.1 3293805..3294329(+) (comL/pilP) [Pseudomonas aeruginosa strain PA12_L1_25.22_ST207]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362