Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QSG83_RS02650 Genome accession   NZ_CP127892
Coordinates   333980..334615 (-) Length   211 a.a.
NCBI ID   WP_317028262.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SAAt401     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328980..339615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSG83_RS02620 (QSG83_02620) - 329367..329654 (+) 288 WP_004974653.1 lipid asymmetry maintenance protein MlaB -
  QSG83_RS02625 (QSG83_02625) - 329879..330892 (-) 1014 WP_096901036.1 CorA family divalent cation transporter -
  QSG83_RS02630 (QSG83_02630) tnpA 331051..331449 (-) 399 WP_317028259.1 IS200/IS605 family transposase -
  QSG83_RS02635 (QSG83_02635) - 331489..332706 (+) 1218 WP_317028260.1 RNA-guided endonuclease TnpB family protein -
  QSG83_RS02640 (QSG83_02640) - 332887..333489 (+) 603 WP_179995236.1 TIGR00730 family Rossman fold protein -
  QSG83_RS02645 (QSG83_02645) - 333491..333901 (+) 411 WP_317028261.1 NUDIX domain-containing protein -
  QSG83_RS02650 (QSG83_02650) comF 333980..334615 (-) 636 WP_317028262.1 phosphoribosyltransferase family protein Machinery gene
  QSG83_RS02655 (QSG83_02655) recG 334634..336679 (-) 2046 WP_167846341.1 ATP-dependent DNA helicase RecG -
  QSG83_RS02660 (QSG83_02660) - 336716..337495 (+) 780 WP_317028263.1 NAD(P)H-binding protein -
  QSG83_RS02665 (QSG83_02665) - 337594..337842 (+) 249 WP_317028264.1 type II toxin-antitoxin system HicA family toxin -
  QSG83_RS02670 (QSG83_02670) - 337839..338174 (+) 336 WP_180051893.1 type II toxin-antitoxin system HicB family antitoxin -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24639.67 Da        Isoelectric Point: 9.9731

>NTDB_id=845083 QSG83_RS02650 WP_317028262.1 333980..334615(-) (comF) [Acinetobacter towneri strain SAAt401]
MTQPINLVQRGIQWLRQLQPCQLCHSDTQWQHSVCQTCWQQLPWRSQAVQRQEMQIQVTFDYHYPINRIIQQFKYEQQLH
YQLLLVGALKQLSYPKIQAIVPMPISTARLTERGYNQSLLLAKGLARHLNVPIWQPVTRLQQHAQKGLSRLERLEDIQQQ
FQIQTAPKIRYRRVLIVDDVVTTGSSIHALKQQLLKLGCQKVEAVCLASAE

Nucleotide


Download         Length: 636 bp        

>NTDB_id=845083 QSG83_RS02650 WP_317028262.1 333980..334615(-) (comF) [Acinetobacter towneri strain SAAt401]
ATGACTCAGCCAATCAACCTAGTACAACGCGGCATACAATGGCTGCGCCAACTGCAACCGTGTCAGCTCTGCCATAGCGA
CACGCAATGGCAACATTCGGTCTGTCAAACCTGTTGGCAACAATTGCCGTGGCGTAGCCAAGCGGTACAACGACAAGAAA
TGCAGATTCAAGTCACTTTTGATTATCACTATCCAATTAATCGCATCATTCAACAATTTAAATATGAACAGCAGTTACAT
TACCAACTGCTTTTAGTAGGCGCGCTAAAACAACTGTCTTATCCTAAAATCCAAGCCATTGTACCGATGCCAATTTCCAC
TGCCCGCTTGACTGAACGCGGCTACAATCAATCTTTATTGTTAGCAAAAGGACTAGCGCGGCATTTAAATGTCCCGATTT
GGCAACCTGTGACCCGCTTACAACAGCACGCGCAAAAAGGCTTAAGTCGCTTAGAACGACTAGAAGATATCCAACAGCAA
TTTCAAATTCAGACTGCGCCTAAAATCCGTTATCGTCGAGTTTTAATTGTGGATGATGTGGTCACGACAGGCAGTTCAAT
TCATGCACTCAAACAACAGTTGCTCAAACTCGGCTGTCAAAAAGTCGAAGCGGTCTGTCTCGCCAGTGCTGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

62.312

94.313

0.588
  comF Acinetobacter baumannii D1279779

61.809

94.313

0.583