Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QQ994_RS07155 Genome accession   NZ_CP127872
Coordinates   1564745..1565380 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain RYYT.1b     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559745..1570380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ994_RS07135 (QQ994_07135) - 1559944..1560876 (+) 933 WP_046617069.1 ABC transporter ATP-binding protein -
  QQ994_RS07140 (QQ994_07140) - 1560873..1561652 (+) 780 WP_003260104.1 ABC transporter permease -
  QQ994_RS07145 (QQ994_07145) - 1561650..1562168 (-) 519 Protein_1386 DUF2062 domain-containing protein -
  QQ994_RS07150 (QQ994_07150) comA 1562311..1564527 (+) 2217 WP_075046908.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QQ994_RS07155 (QQ994_07155) exbB 1564745..1565380 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QQ994_RS07160 (QQ994_07160) - 1565377..1565811 (+) 435 WP_025338207.1 biopolymer transporter ExbD -
  QQ994_RS07165 (QQ994_07165) lpxK 1565811..1566812 (+) 1002 WP_286101256.1 tetraacyldisaccharide 4'-kinase -
  QQ994_RS07170 (QQ994_07170) - 1566857..1567042 (+) 186 WP_011532874.1 Trm112 family protein -
  QQ994_RS07175 (QQ994_07175) kdsB 1567039..1567803 (+) 765 WP_286101257.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QQ994_RS07180 (QQ994_07180) - 1567803..1568267 (+) 465 WP_003259973.1 low molecular weight protein-tyrosine-phosphatase -
  QQ994_RS07185 (QQ994_07185) murB 1568264..1569283 (+) 1020 WP_286101258.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=844959 QQ994_RS07155 WP_016391244.1 1564745..1565380(+) (exbB) [Pseudomonas asiatica strain RYYT.1b]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=844959 QQ994_RS07155 WP_016391244.1 1564745..1565380(+) (exbB) [Pseudomonas asiatica strain RYYT.1b]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGCCTGGCCAAC
TCGCGTCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGACGAGCTGGTAGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829