Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QQ994_RS03265 Genome accession   NZ_CP127872
Coordinates   723659..724525 (-) Length   288 a.a.
NCBI ID   WP_286100996.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain RYYT.1b     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 718659..729525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ994_RS03235 (QQ994_03235) - 719545..720840 (-) 1296 WP_025337608.1 NAD(P)/FAD-dependent oxidoreductase -
  QQ994_RS03240 (QQ994_03240) - 720925..721098 (-) 174 WP_013970765.1 DUF3094 family protein -
  QQ994_RS03245 (QQ994_03245) - 721232..721861 (-) 630 WP_013970766.1 DUF1780 domain-containing protein -
  QQ994_RS03250 (QQ994_03250) - 721995..722702 (+) 708 WP_286100995.1 energy-coupling factor ABC transporter permease -
  QQ994_RS03255 (QQ994_03255) yacG 722839..723039 (-) 201 WP_003260624.1 DNA gyrase inhibitor YacG -
  QQ994_RS03260 (QQ994_03260) coaE 723036..723659 (-) 624 WP_075043664.1 dephospho-CoA kinase -
  QQ994_RS03265 (QQ994_03265) pilD 723659..724525 (-) 867 WP_286100996.1 A24 family peptidase Machinery gene
  QQ994_RS03270 (QQ994_03270) - 724528..725736 (-) 1209 WP_286100997.1 type II secretion system F family protein -
  QQ994_RS03275 (QQ994_03275) - 725953..726363 (+) 411 WP_075043667.1 pilin -
  QQ994_RS03285 (QQ994_03285) - 727388..728257 (-) 870 WP_286100998.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32089.25 Da        Isoelectric Point: 7.6378

>NTDB_id=844953 QQ994_RS03265 WP_286100996.1 723659..724525(-) (pilD) [Pseudomonas asiatica strain RYYT.1b]
MTLWTLLAEQPAYFLTLATVLGLVVGSFLNVLVYRLPIMLERQWQREAQEMLELPITPHERFDLWLPASRCPHCEHRIRA
WENIPVISYLALRGRCSACKTRISPRYPLVEVASALLSLVVAWRFGASPEALLALPLTWCLLALSLIDAEHQLLPDALVL
PMLWLGLIVNAFGLYIPLTSALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LAGLCLLRLRRHAMGTAIPFGPYLAIAGWIAVLWGDEIYASYTQLLGF

Nucleotide


Download         Length: 867 bp        

>NTDB_id=844953 QQ994_RS03265 WP_286100996.1 723659..724525(-) (pilD) [Pseudomonas asiatica strain RYYT.1b]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTTCTCACCCTGGCCACGGTGCTGGGCCTAGTGGTGGGCAG
TTTTCTCAATGTGCTGGTTTACCGACTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAGGAAATGCTGGAAT
TGCCGATCACGCCGCACGAGCGTTTCGACCTGTGGCTACCTGCCTCGCGCTGCCCGCATTGCGAGCATCGAATTCGCGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGCGCGGGCGTTGTTCAGCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGTTGGTGGAGGTGGCCAGCGCGCTGCTGTCGCTGGTGGTGGCCTGGCGCTTTGGTGCTTCGCCCGAGGCCTTGCTGG
CGCTGCCGCTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGAGCACCAGTTGCTGCCGGATGCGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTCGGCCTCTATATCCCGCTGACCAGCGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTTTGGACGGTGTACTGGGTGTTCAAGCTGGTTACCGGCAAGGAGGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGTTGACCTTGCTGTTGTCGTCGGTGGTCGGGGCG
CTGGCTGGGCTGTGTCTGCTGCGTCTGCGCCGCCATGCCATGGGTACGGCGATCCCGTTCGGCCCCTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCTTCATACACACAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-125)

Type IV leader peptidase family (Peptidase_A24)

(137-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.182

95.486

0.517
  pilD Acinetobacter baumannii D1279779

52.143

97.222

0.507
  pilD Acinetobacter nosocomialis M2

51.429

97.222

0.5
  pilD Vibrio campbellii strain DS40M4

49.822

97.569

0.486
  pilD Neisseria gonorrhoeae MS11

50.566

92.014

0.465