Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   L6410_RS09565 Genome accession   NZ_AP024276
Coordinates   1900484..1901218 (-) Length   244 a.a.
NCBI ID   WP_024392614.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1895484..1906218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS09540 (SUT286_18590) - 1896421..1897275 (-) 855 WP_024392617.1 helix-turn-helix domain-containing protein -
  L6410_RS09545 (SUT286_18600) rpmB 1897577..1897765 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  L6410_RS09550 (SUT286_18610) trmB 1897968..1898606 (-) 639 WP_024392616.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  L6410_RS09555 (SUT286_18620) ccrZ 1898603..1899397 (-) 795 WP_024392615.1 cell cycle regulator CcrZ -
  L6410_RS09560 (SUT286_18630) - 1899447..1900487 (-) 1041 WP_237395402.1 ABC transporter permease -
  L6410_RS09565 (SUT286_18640) pptA 1900484..1901218 (-) 735 WP_024392614.1 ABC transporter ATP-binding protein Regulator
  L6410_RS09570 (SUT286_18650) - 1901281..1901694 (+) 414 WP_024392613.1 HIT family protein -
  L6410_RS09575 (SUT286_18660) - 1901696..1901998 (+) 303 WP_024392612.1 hypothetical protein -
  L6410_RS09580 (SUT286_18670) brpA 1902140..1903315 (-) 1176 WP_024392611.1 biofilm formation/cell division transcriptional regulator BrpA -
  L6410_RS09585 (SUT286_18680) - 1903312..1903839 (-) 528 WP_024392610.1 GNAT family N-acetyltransferase -
  L6410_RS09590 (SUT286_18690) tsaE 1903832..1904272 (-) 441 WP_032512128.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  L6410_RS09595 (SUT286_18700) - 1904378..1906042 (-) 1665 WP_024392608.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27105.47 Da        Isoelectric Point: 4.6747

>NTDB_id=84493 L6410_RS09565 WP_024392614.1 1900484..1901218(-) (pptA) [Streptococcus parasuis strain SUT-286]
MLEVKNITGGYINIPVLKDVSFTVENGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGEILIDGKSLVQDAENYRKKIGFIP
ETPSLYEELTLKEHLEVVALAYNLTWDQAWSRVQGLLTIFRLDEKLDWFPVHFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLVNLLEEEKAKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQHAFNMKGASLNEIYLALTQE
GVAR

Nucleotide


Download         Length: 735 bp        

>NTDB_id=84493 L6410_RS09565 WP_024392614.1 1900484..1901218(-) (pptA) [Streptococcus parasuis strain SUT-286]
ATGTTAGAAGTAAAAAATATTACAGGAGGCTACATCAATATTCCCGTATTGAAAGATGTATCTTTCACTGTTGAGAATGG
TCAGTTAGTTGGCTTGATTGGATTGAATGGTGCTGGGAAATCAACGACGATAAAGGAAATTATTGGCCTTTTGACTCCTT
ATCAGGGAGAAATTTTAATTGATGGGAAAAGTCTTGTACAGGATGCGGAGAATTATCGGAAGAAAATTGGCTTTATCCCT
GAAACACCTAGCTTGTATGAGGAATTGACGCTTAAGGAACATTTAGAGGTAGTAGCTTTAGCCTATAATTTGACTTGGGA
TCAAGCCTGGAGTCGAGTTCAGGGGTTGTTAACGATTTTTCGGTTGGATGAAAAGTTGGACTGGTTCCCTGTTCATTTTT
CTAAGGGAATGAAACAGAAAGTTATGATTATCTGTGCTTTCATGGTGGAACCGAGTTTGTTGATTGTTGACGAGCCGTTT
TTAGGGCTGGATCCTGTAGCGATTTCGGACTTAGTAAACCTATTAGAAGAGGAGAAAGCTAAAGGAACTTCAATTCTGAT
GTCTACTCATGTTCTTGACTCAGCCGAGAAAATGTGTGATTCTTTTGTTATCTTACATCAGGGGCAGGTTCGTGCGACAG
GGAATTTAGAGGAATTGCAACATGCCTTTAACATGAAAGGTGCAAGTCTCAACGAAATTTATCTGGCGTTGACACAAGAA
GGAGTGGCCAGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

71.13

97.951

0.697
  pptA Streptococcus thermophilus LMD-9

69.874

97.951

0.684

Multiple sequence alignment