Detailed information NTG0844929

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QQ992_RS03560
• Genome accession: NZ_CP127871
• Coordinates: 787284..788150 (-)
• Length: 288 a.a.
• NCBI ID: WP_286112227.1
• Uniprot ID: -
• Organism: Pseudomonas kurunegalensis strain ANKC.G2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 782284..793150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQ992_RS03525 (QQ992_03525)	-	782815..784110 (-)	1296	WP_063911149.1	NAD(P)/FAD-dependent oxidoreductase	-
QQ992_RS03530 (QQ992_03530)	-	784195..784368 (-)	174	WP_013970765.1	DUF3094 family protein	-
QQ992_RS03535 (QQ992_03535)	-	784501..785130 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
QQ992_RS03540 (QQ992_03540)	-	785186..785617 (-)	432	WP_025754726.1	hypothetical protein	-
QQ992_RS03545 (QQ992_03545)	-	785704..786411 (+)	708	WP_286112225.1	energy-coupling factor ABC transporter permease	-
QQ992_RS03550 (QQ992_03550)	yacG	786464..786664 (-)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
QQ992_RS03555 (QQ992_03555)	coaE	786661..787284 (-)	624	WP_286112226.1	dephospho-CoA kinase	-
QQ992_RS03560 (QQ992_03560)	pilD	787284..788150 (-)	867	WP_286112227.1	A24 family peptidase	Machinery gene
QQ992_RS03565 (QQ992_03565)	-	788153..789361 (-)	1209	WP_286112228.1	type II secretion system F family protein	-
QQ992_RS03570 (QQ992_03570)	-	789578..789988 (+)	411	WP_286112229.1	pilin	-
QQ992_RS03580 (QQ992_03580)	-	790410..791564 (+)	1155	WP_286112230.1	Fic family protein	-
QQ992_RS03585 (QQ992_03585)	-	792006..792224 (-)	219	WP_286112231.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31937.13 Da
• Isoelectric Point: 7.5984

>NTDB_id=844929 QQ992_RS03560 WP_286112227.1 787284..788150(-) (pilD) [Pseudomonas kurunegalensis strain ANKC.G2]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTQHERFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGRCSSCKTRISPRYPVVEIASALLSLVVAWRFGASGETLLALPLTWCLLALSLIDAEHQLLPDVLVL
PMLWLGLIVNAFGLYVPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=844929 QQ992_RS03560 WP_286112227.1 787284..788150(-) (pilD) [Pseudomonas kurunegalensis strain ANKC.G2]
ATGACTTTATGGACTTTGCTGGCTGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGTCTGTTGGTGGGCAG
TTTTCTCAATGTGCTGGTGTATCGGCTACCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGC
TGCCGGTTACGCAACACGAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTCATCAGTTACCTGGCATTGCGCGGGCGCTGTTCATCCTGCAAAACCCGCATCAGCCCGCGCTA
CCCGGTGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGCTTTGGCGCTTCTGGCGAAACCTTGCTGG
CACTGCCGCTCACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCCGAGCATCAGCTGTTGCCGGATGTGCTGGTGCTG
CCAATGCTGTGGCTGGGGCTGATCGTGAACGCCTTCGGCCTTTATGTGCCGTTGACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGAAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACGCTGCTGCTGTCGTCGGTGGTGGGGGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.261	95.833	0.51
pilD	Acinetobacter baumannii D1279779	50.89	97.569	0.497
pilD	Acinetobacter nosocomialis M2	50.178	97.569	0.49
pilD	Vibrio campbellii strain DS40M4	49.64	96.528	0.479
pilD	Neisseria gonorrhoeae MS11	50	93.056	0.465