Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   QQ988_RS08595 Genome accession   NZ_CP127869
Coordinates   1829515..1830090 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NG02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824515..1835090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ988_RS08565 (QQ988_08565) - 1825042..1825980 (+) 939 WP_136627495.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QQ988_RS08570 (QQ988_08570) - 1826331..1826888 (-) 558 WP_001831688.1 GNAT family N-acetyltransferase -
  QQ988_RS08575 (QQ988_08575) - 1827118..1827333 (+) 216 WP_001831694.1 NINE protein -
  QQ988_RS12070 - 1827437..1827553 (+) 117 WP_350044794.1 SAR1012 family small protein -
  QQ988_RS08580 (QQ988_08580) - 1828582..1828803 (-) 222 WP_241158849.1 hypothetical protein -
  QQ988_RS08595 (QQ988_08595) comK/comK1 1829515..1830090 (-) 576 WP_001829272.1 competence protein ComK Regulator
  QQ988_RS08600 (QQ988_08600) - 1830305..1830523 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  QQ988_RS08605 (QQ988_08605) - 1830601..1831587 (-) 987 WP_002493414.1 lipoate--protein ligase -
  QQ988_RS08610 (QQ988_08610) - 1831792..1831977 (+) 186 WP_001829339.1 DUF2187 family protein -
  QQ988_RS08615 (QQ988_08615) - 1831983..1832585 (+) 603 WP_161388334.1 CPBP family glutamic-type intramembrane protease -
  QQ988_RS08620 (QQ988_08620) - 1832688..1834193 (-) 1506 WP_002476551.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=844919 QQ988_RS08595 WP_001829272.1 1829515..1830090(-) (comK/comK1) [Staphylococcus epidermidis strain NG02]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=844919 QQ988_RS08595 WP_001829272.1 1829515..1830090(-) (comK/comK1) [Staphylococcus epidermidis strain NG02]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTCTAAATATTTTCGAGGCGCTTTCACGTTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743