Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QQ988_RS07655 Genome accession   NZ_CP127869
Coordinates   1624885..1625757 (-) Length   290 a.a.
NCBI ID   WP_002476656.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NG02     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1586447..1657236 1624885..1625757 within 0


Gene organization within MGE regions


Location: 1586447..1657236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ988_RS07510 (QQ988_07510) - 1587487..1588758 (-) 1272 WP_002468568.1 pitrilysin family protein -
  QQ988_RS07515 (QQ988_07515) - 1588788..1589501 (-) 714 WP_002493736.1 GntR family transcriptional regulator -
  QQ988_RS07520 (QQ988_07520) - 1589504..1591897 (-) 2394 WP_002473842.1 DNA translocase FtsK -
  QQ988_RS07525 (QQ988_07525) - 1592163..1593836 (-) 1674 WP_002494823.1 ribonuclease J -
  QQ988_RS07530 (QQ988_07530) pnp 1594204..1596309 (-) 2106 WP_002468566.1 polyribonucleotide nucleotidyltransferase -
  QQ988_RS07535 (QQ988_07535) rpsO 1596441..1596710 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  QQ988_RS07540 (QQ988_07540) - 1596830..1597801 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  QQ988_RS07545 (QQ988_07545) truB 1597817..1598734 (-) 918 WP_002493738.1 tRNA pseudouridine(55) synthase TruB -
  QQ988_RS07550 (QQ988_07550) rbfA 1598872..1599222 (-) 351 WP_002457359.1 30S ribosome-binding factor RbfA -
  QQ988_RS07555 (QQ988_07555) infB 1599523..1601667 (-) 2145 WP_002468558.1 translation initiation factor IF-2 -
  QQ988_RS07560 (QQ988_07560) - 1601672..1601989 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  QQ988_RS07565 (QQ988_07565) - 1601989..1602273 (-) 285 WP_002468555.1 YlxR family protein -
  QQ988_RS07570 (QQ988_07570) nusA 1602291..1603514 (-) 1224 WP_002468562.1 transcription termination factor NusA -
  QQ988_RS07575 (QQ988_07575) rimP 1603535..1604002 (-) 468 WP_002468547.1 ribosome maturation factor RimP -
  QQ988_RS07580 (QQ988_07580) - 1604182..1608492 (-) 4311 WP_100199546.1 PolC-type DNA polymerase III -
  QQ988_RS07585 (QQ988_07585) - 1608742..1610445 (-) 1704 WP_002468557.1 proline--tRNA ligase -
  QQ988_RS07590 (QQ988_07590) rseP 1610464..1611750 (-) 1287 WP_001829501.1 RIP metalloprotease RseP -
  QQ988_RS07595 (QQ988_07595) - 1611983..1612765 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  QQ988_RS07600 (QQ988_07600) - 1612769..1613539 (-) 771 WP_002468551.1 isoprenyl transferase -
  QQ988_RS07605 (QQ988_07605) frr 1613760..1614314 (-) 555 WP_002468545.1 ribosome recycling factor -
  QQ988_RS07610 (QQ988_07610) pyrH 1614331..1615053 (-) 723 WP_002439511.1 UMP kinase -
  QQ988_RS07615 (QQ988_07615) tsf 1615194..1616072 (-) 879 WP_002439509.1 translation elongation factor Ts -
  QQ988_RS07620 (QQ988_07620) rpsB 1616224..1617012 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  QQ988_RS07625 (QQ988_07625) codY 1617371..1618144 (-) 774 WP_002446289.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QQ988_RS07630 (QQ988_07630) hslU 1618168..1619571 (-) 1404 WP_001829474.1 ATP-dependent protease ATPase subunit HslU -
  QQ988_RS07635 (QQ988_07635) hslV 1619640..1620182 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  QQ988_RS07640 (QQ988_07640) xerC 1620186..1621076 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  QQ988_RS07645 (QQ988_07645) trmFO 1621301..1622608 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QQ988_RS07650 (QQ988_07650) topA 1622633..1624702 (-) 2070 WP_002476657.1 type I DNA topoisomerase -
  QQ988_RS07655 (QQ988_07655) dprA 1624885..1625757 (-) 873 WP_002476656.1 DNA-processing protein DprA Machinery gene
  QQ988_RS07660 (QQ988_07660) sucD 1626561..1627469 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  QQ988_RS07665 (QQ988_07665) sucC 1627491..1628657 (-) 1167 WP_002476655.1 ADP-forming succinate--CoA ligase subunit beta -
  QQ988_RS07670 (QQ988_07670) - 1628765..1629535 (-) 771 WP_002473843.1 ribonuclease HII -
  QQ988_RS07675 (QQ988_07675) ylqF 1629540..1630403 (-) 864 WP_002468554.1 ribosome biogenesis GTPase YlqF -
  QQ988_RS07680 (QQ988_07680) - 1630732..1633332 (+) 2601 WP_002476654.1 YfhO family protein -
  QQ988_RS07685 (QQ988_07685) - 1633325..1635928 (+) 2604 WP_002476653.1 YfhO family protein -
  QQ988_RS07690 (QQ988_07690) rplS 1636459..1636809 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  QQ988_RS07695 (QQ988_07695) trmD 1636915..1637652 (-) 738 WP_002476652.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QQ988_RS07700 (QQ988_07700) rimM 1637652..1638155 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  QQ988_RS07705 (QQ988_07705) rpsP 1638282..1638557 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  QQ988_RS07710 (QQ988_07710) ffh 1638802..1640169 (-) 1368 WP_001830113.1 signal recognition particle protein -
  QQ988_RS07715 (QQ988_07715) - 1640200..1640532 (-) 333 WP_002473260.1 putative DNA-binding protein -
  QQ988_RS07720 (QQ988_07720) ftsY 1640534..1641760 (-) 1227 WP_002473240.1 signal recognition particle-docking protein FtsY -
  QQ988_RS07725 (QQ988_07725) smc 1641757..1645326 (-) 3570 WP_161388147.1 chromosome segregation protein SMC -
  QQ988_RS07730 (QQ988_07730) rnc 1645453..1646190 (-) 738 WP_002476648.1 ribonuclease III -
  QQ988_RS07735 (QQ988_07735) - 1646305..1646538 (-) 234 WP_001830184.1 acyl carrier protein -
  QQ988_RS07740 (QQ988_07740) fabG 1646764..1647498 (-) 735 WP_002476647.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QQ988_RS07745 (QQ988_07745) fabD 1647491..1648417 (-) 927 WP_002476646.1 ACP S-malonyltransferase -
  QQ988_RS07750 (QQ988_07750) plsX 1648419..1649396 (-) 978 WP_002476645.1 phosphate acyltransferase PlsX -
  QQ988_RS07755 (QQ988_07755) fapR 1649398..1649958 (-) 561 WP_001830099.1 transcription factor FapR -
  QQ988_RS07760 (QQ988_07760) recG 1650117..1652165 (-) 2049 WP_002476644.1 ATP-dependent DNA helicase RecG -
  QQ988_RS07765 (QQ988_07765) fakA 1652370..1654028 (-) 1659 WP_002476643.1 fatty acid kinase catalytic subunit FakA -
  QQ988_RS07770 (QQ988_07770) - 1654043..1654417 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  QQ988_RS07775 (QQ988_07775) rpmB 1654775..1654963 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  QQ988_RS07780 (QQ988_07780) - 1655046..1655681 (-) 636 WP_002476642.1 thiamine diphosphokinase -
  QQ988_RS07785 (QQ988_07785) rpe 1655686..1656330 (-) 645 WP_001830173.1 ribulose-phosphate 3-epimerase -
  QQ988_RS07790 (QQ988_07790) rsgA 1656331..1657206 (-) 876 WP_002476641.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33872.82 Da        Isoelectric Point: 9.4573

>NTDB_id=844918 QQ988_RS07655 WP_002476656.1 1624885..1625757(-) (dprA) [Staphylococcus epidermidis strain NG02]
MIQHTMLKLYWANFTTAQLHHLTRTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKMMDIFKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSKGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=844918 QQ988_RS07655 WP_002476656.1 1624885..1625757(-) (dprA) [Staphylococcus epidermidis strain NG02]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACACGTACATATCC
TGACTTTCTATCAGAAAATGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGATGATGGACATTTTTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAATAAGTATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAAAGGGGTGCTTATAACTGAGGCTGAAGAAAGAAGCGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

99.31

0.569
  dprA Staphylococcus aureus N315

57.292

99.31

0.569