Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   L6410_RS09090 Genome accession   NZ_AP024276
Coordinates   1808603..1810393 (-) Length   596 a.a.
NCBI ID   WP_237395367.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SUT-286     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1803603..1815393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6410_RS09070 (SUT286_17650) - 1804507..1805409 (-) 903 WP_024391409.1 ABC transporter permease -
  L6410_RS09075 (SUT286_17660) opp4B 1805423..1806379 (-) 957 WP_024391408.1 oligopeptide ABC transporter permease -
  L6410_RS09080 (SUT286_17670) - 1806381..1807322 (-) 942 WP_029749427.1 ATP-binding cassette domain-containing protein -
  L6410_RS09085 (SUT286_17680) - 1807325..1808344 (-) 1020 WP_172024807.1 ABC transporter ATP-binding protein -
  L6410_RS09090 (SUT286_17690) oppA 1808603..1810393 (-) 1791 WP_237395367.1 oligopeptide ABC transporter substrate-binding protein Regulator
  L6410_RS09095 (SUT286_17700) pbp3 1810605..1811846 (+) 1242 WP_237395368.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  L6410_RS09100 (SUT286_17720) sufB 1812214..1813629 (-) 1416 WP_237395369.1 Fe-S cluster assembly protein SufB -
  L6410_RS09105 (SUT286_17730) sufU 1814005..1814445 (-) 441 WP_160863728.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65819.34 Da        Isoelectric Point: 4.3453

>NTDB_id=84491 L6410_RS09090 WP_237395367.1 1808603..1810393(-) (oppA) [Streptococcus parasuis strain SUT-286]
MKKTTKLFALAGVTLLSASVLAACGSKSSSSSETAELSFPSEVKQDGTAVSDAQLKYAWVSPTTSSGLLIDELTENTTDS
TFGGFVDISLFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGEPFTIDDYIFTIKSMASKDYTGVRFDDKFL
NIEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAFIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEYYFKGQPKTSSLKVDIVSPDTIVSEMKAGNYDIAEMPVDQLDSYKDASNLNIVGQLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAYEQAFAIPTFESEKVTA
LNKRVKNYDTNYGSASGNGFAYEGIELTADKGVAAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=84491 L6410_RS09090 WP_237395367.1 1808603..1810393(-) (oppA) [Streptococcus parasuis strain SUT-286]
ATGAAAAAGACGACTAAATTATTTGCTCTAGCGGGTGTAACGCTTCTTTCGGCATCTGTACTTGCTGCGTGTGGTTCTAA
ATCTTCTTCTAGCTCTGAGACAGCAGAGTTATCTTTCCCATCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTC
AGTTGAAATACGCATGGGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCA
ACATTTGGTGGTTTTGTTGATATTTCACTGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGC
TGAATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACTGGTAAAGACTACAAGTGGTCAGATGGTGAACCATTTA
CTATCGATGATTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTG
AACATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGT
GGAATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCAGGTGGTGATGTCCCAGCCTTTATCCAACCAGAACACA
TCTATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGG
AAAATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTACTTCAAGGGACAACCAAAAACAAG
CTCATTAAAGGTTGATATTGTATCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCTGAGATGC
CTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTCAGTTAGACTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCGGGAGAGTCATTGTATAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGTTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCACTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTTGGATTGA
ATGTTGAACTCTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATTGAT
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGACCTATCGCTGCCTTTAACATGTC
ACGCTTCGTGTCTGATGAAAACACTAAATTGTTGAATGCAATTAGCTCAACAGAATCATTTGATGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTTACGAACAAGCATTTGCTATTCCAACATTTGAATCTGAAAAGGTTACAGCA
CTTAACAAACGTGTGAAAAACTATGACACTAACTATGGTTCAGCTTCAGGAAACGGTTTTGCTTATGAGGGTATCGAACT
TACAGCTGATAAAGGTGTAGCAGCTGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(104-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

91.29

100

0.914

Multiple sequence alignment